IUBio

PHRAP/CONSED Bibliography

Dr. Andrew G. McArthur mcarthur at evol5.mbl.edu
Mon Apr 5 17:47:29 EST 1999


As promised...

Buetow KH, Edmonson MN, Cassidy AB. Reliable identification of large
numbers of candidate SNPs from public EST data. Nat Genet 1999
Mar;21(3):323-5

Durbin R, Dear S. Base qualities help sequencing software. Genome Res 1998
Mar;8(3):161-2.

Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer
traces using phred. I. Accuracy assessment. Genome Res 1998
Mar;8(3):175-85.

Ewing B, Green P. Base-calling of automated sequencer traces using phred.
II. Error probabilities. Genome Res 1998 Mar;8(3):186-94 .

Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence
finishing. Genome Res 1998 Mar;8(3):195-202.

Nickerson DA, Tobe VO, Taylor SL. PolyPhred: automating the detection and
genotyping of single nucleotide substitutions using fluorescence-based
resequencing. Nucleic Acids Res 1997 Jul 15;25(14):2745-51.

Richterich P. Estimation of errors in "raw" DNA sequences: a validation
study. Genome Res 1998 Mar;8(3):251-9.

Rieder MJ, Taylor SL, Tobe VO, Nickerson DA. Automating the identification
of DNA variations using quality-based fluorescence re-sequencing: analysis
of the human mitochondrial genome. Nucleic Acids Res 1998 Feb
15;26(4):967-73.

Smith TM, Abajian C, Hood L. Hopper: software for automating data tracking
and flow in DNA sequencing. Comput Appl Biosci 1997 Apr;13(2):175-82.

Wendl MC, Dear S, Hodgson D, Hillier L. Automated sequence preprocessing
in a large-scale sequencing environment. Genome Res 1998 Sep;8(9):975-84.






More information about the Autoseq mailing list

Send comments to us at biosci-help [At] net.bio.net