Hello,
just in case you did not get any answer,
I think it is in method.ace that you define how homologies are presented
on screen, for example for Blastn this is the definition find in the
distibution of ACeDB :
// data dumped from keyset display
Method : "BLASTN"
Display Colour LIGHTBLUE
Score_by_width
Score_bounds 100.000000 400.000000
Right_priority 5.200000
Strand_sensitive Show_Up_Strand
Blastn
Blixem_N
Best Regards
Florent
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