In webace when you are viewing a sequence with homologies there is a very
nice feature 'Show homology table / DNA alignments' which shows sequence
matches by base pair whereby orange indicates match, and blue mismatch.
However I notice it doesn't do gapped alignments. Is there a software fix
or an option for doing this?
Alternatively is there another way (perhaps using AceBrowser) where you
can view alignments at the base pair level and include gaps.
Nottingham Arabidopsis Stock Centre (NASC)
School of Biological Sciences
University of Nottingham, Nottingham, NG7 2RD
Phone: 0115 951 3091
Fax: 0115 951 3297
NASC website: nasc.nott.ac.uk