Hello Keith,
Aha, you ended up with AGR. Congratulations.
It is not a sequence map that you need. What glues separate clone
sequences together in the worm database is the *LINK* objects in the
Sequence class. They have the separate entries as subsequences, e.g.
Sequence : "LINK_Y39B6B"
Source "SUPERLINK_CB_V"
Subsequence "B0399" 556032 599668
Subsequence "B0399.1" 568119 608616
Subsequence "B0399.2" 558575 550832
Subsequence "C14B4" 358654 346803
Subsequence "C14B4.2" 347961 335484
Subsequence "C25F9" 441189 397306
Subsequence "C43D7" 346906 311926
Subsequence "F21D9" 282729 244387
Subsequence "F55C9" 312029 282626
Subsequence "Y39B6B" 1 207022
Subsequence "T26H2" 244487 206919
Subsequence "Y43F8A" 358551 397406
Subsequence "M04C3" 454554 441086
Subsequence "Y43F8B" 454454 556132
Subsequence "Y43F8C" 599568 720059
Subsequence "Y116F11A" 719951 733832
Subsequence "M04C3.1" 446349 440693
We use the Overlap_right and Overlap_left tags in acedb to store the
overlap information, then use a script as in the next message to
rebuild the link objects, which are what acedb needs.
Richard
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