IUBio

parser for BLAST2?

Tim Cutts timc at chiark.greenend.org.uk
Tue Dec 14 05:07:06 EST 1999


In article <833iqu$lus$1 at nnrp1.deja.com>,
 <schwartz at uclink4.berkeley.edu> wrote:
>Hi All,
>
>I was wondering if there is a parser for Blast2, gapped blast?
>  I have been using ungapped blast and MSPCrunch to parse it into
>ACeDB format and was just wondering if there is a newer version?
>(I can't seem to find Eric Sonhammer's current ftp site.)

The latyest version of MSPcrunch certainly supports BLAST 2.  I was
trying it out yesterday!  You can download it from:

ftp://ftp.cgr.ki.se/pub/prog/MSPcrunch+Blixem

Tim.





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