I am trying to upgrade from ACEDB3 to ACEDB4.1, but when I start
ACEDB4.1, I get errors regarding my models. These models worked
in ACEDB3. The errors seem to fall into 3 classes:
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1) Model error: non-tag ?Journal in column in model ?Paper
//------------------------------------------------------------------
?Journal Paper ?Paper XREF Journal
//------------------------------------------------------------------
?Paper Reference Title UNIQUE ?Text
Journal UNIQUE ?Journal XREF Paper
Unpublished
Volume UNIQUE Text Text
Pages UNIQUE Text
Year UNIQUE Text
Publisher UNIQUE Text
Author ?Author XREF Paper
Contained_in ?Paper XREF Contains
Editor ?Author
Medline_ID UNIQUE Int
GenBank UNIQUE Text
Accession UNIQUE Text
Abstract ?LongText
Type UNIQUE Text
Contains ?Paper XREF Contained_in
Image ?Image XREF Paper
Refers_to ANY
Keyword ?Keyword
Remark Text
Journal does, in fact appear as a tag in tags.wrm.
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2) Model error: tag Strain outside rooted subtree in model ?DNA_Sample
//------------------------------------------------------------------
?DNA_Sample Name Text
Experiment ?Experiment XREF DNA_Sample
Image ?Image
Accession Text
DNA_Type UNIQUE Plasmid ?Plasmid XREF DNA_Sample
Vector ?Vector XREF DNA_Sample
Genomic ?Species Strain Text
Linear_DNA ?Linear_DNA XREF DNA_Sample
Conc.[ug_per_ul] Float
Freezer Text
Box Text
###########################################################################
3) Model error: In model ?Library, tag Paper XREF's to tag Library
in class ?Paper
can't find tag Library in model ?Paper
//------------------------------------------------------------------
?Library Name Text // Full name
Description ?Text // Description of material included
Laboratory ?Laboratory
Author ?Author
Paper ?Paper XREF Library
Experiment ?Experiment XREF Library REPEAT
Donor_Species ?Species
Strain Text
Library_Type UNIQUE cDNA
Genomic UNIQUE sheared
Restriction_Enzyme Text
Vector ?Vector
Restriction_Site Text Text
Host_Strain ?Bacterial_Stock
Some class 3 errors are in models that are unchanged from the
models.wrm as distributed with ACEDB3.Has model syntax changed,
or is ACEDB4.1 just more fastidious at detecting errors?
Also, are there other things I need to know when upgrading from
3.0 to 4.1? Has anyone written any documentation on upgrading?
--
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Brian Fristensky |
Department of Plant Science | A monarch's neck should always
University of Manitoba | have a noose around it --
Winnipeg, MB R3T 2N2 CANADA | it keeps him upright.
frist at cc.umanitoba.ca |
Office phone: 204-474-6085 | Robert A. Heinlein
FAX: 204-261-5732 |
http://home.cc.umanitoba.ca/~frist/
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