counting cells
Dave Matthews
matthews at GREENGENES.CIT.CORNELL.EDU
Fri Sep 22 12:51:32 EST 1995
I said:
> Class 62: object Map_Data:Barley, SxM has 21849 > 1000 celLs, please edit the models
Jean said:
> In the case of Map_Data:Barley, i would also question the model.
I think I don't understand what a cell is. This Map_Data object doesn't
seem to contain 20,000 of anything. (Except bytes, it's 91,000 bytes.)
Here it is:
// data dumped from tree display
Map_Data : "Barley, SxM"
Species "Hordeum vulgare L."
Parent "Steptoe"
Parent "Morex"
Genetic
Map_units "cM"
Reference "TAG-86-705"
Contact "Kleinhofs, Andris"
Remarks "150 doubled haploid F1 progeny from a reciprocal cross. Data from the North American Barley Genome Mapping Project. 437 markers. A = Steptoe allele\; B = Morex allele\; - = missing data."
Map "Hordeum-NABGMP1-1H"
Map "Hordeum-NABGMP1-2H"
Map "Hordeum-NABGMP1-3H"
Map "Hordeum-NABGMP1-4H"
Map "Hordeum-NABGMP1-5H"
Map "Hordeum-NABGMP1-6H"
Map "Hordeum-NABGMP1-7H"
Locus "Nar1" "ABBBA ABBAB BABBB BBBAB AABAA BABBA BAABA AAABA ABABB AABBB BBAAA BBABA BABBB AABAB ABBAA ABBBB AAAAA BABAA BABAB AAAAA AAAAA AABBA BABBA ABBBA BAABB BBABB AAABB BBBBA BAAAA BABAA"
Locus "Ale" " BABBA AABBA BBAAA AABBA AABAA ABAAA ABBBA ABAAA BBBBB BAAAA A---- ----A BABBA AAABB AABAA AB-AA BBBAB BBBAA AABAA AAAAB -BBAA AAAAB BABBB BAABA BAAAB BBABA ABAAA AAABB BABBA BBBAB"
Locus "Dhn6" "AAABA AAABB AA-AB BBBBA BABAA ABAAA ABBAB BBBBA ABBBA BBBA- -ABAB ABABB AAABA BBBAA BAAAB ABABA AAAAA ABAAA BABBA ABABA BAABA BAABA AAABB BAAAB AAAAA BAABB AAABB BBBBA BABBB BAAAB"
... (438 more Locus values)
The model is:
?Map_Data Species ?Species XREF Mapping_data
Female_parent UNIQUE ?Germplasm XREF Mapping_data
Male_parent UNIQUE ?Germplasm XREF Mapping_data
Type Genetic
Cytogenetic
Chromosome_arm
Physical
Map_units Text
Reference ?Reference XREF Mapping_data
Contact ?Colleague
Remarks ?Text
Image ?Image XREF Map
Map ?Map XREF Mapping_data
Locus ?Locus XREF Data Text
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