In article <2vsd3t$iik at crcnis1.unl.edu> vwarwar at unlinfo.unl.edu (vitor warwar) writes:
>Hi:
>> Does anyone now where I can find, in computer readble form,
>PAM and BLOSUM tables?
These can be obtained at NCBI's ftp site:
anonymous FTP to ncbi.nlm.nih.gov
For the blosum tables, look in the directory /repository/blocks/unix/blosum
For the PAM matricies, there is a program called "pam" which will generate the
tables for you (get pam.c and compile). This can be found in
/pub/blast/1.4d/explode/blastapp (there are also some PAM tables already
generated; look in the matrix subdirectory).
Tim Littlejohn
--
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Tim Littlejohn
E-mail: tim at bch.umontreal.ca
Snail Mail: Departement de biochimie Phone: (514) 343-6111, x5149
Universite de Montreal Fax: (514) 343-2210
C.P. 6128, Centre-ville
Montreal (Quebec), H3C 3J7
CANADA
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