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new fungal comparison results in SGD

Kara Dolinski kara at genome.stanford.edu
Mon Sep 16 14:32:08 EST 2002


Hello,

SGD has added the initial results of the genome comparison between S. 
cerevisiae, S. castellii, and S. kluyveri.  These results are kindly 
provided pre-publication by Paul Cliften and Mark Johnston.  You can 
view ClustalW alignments of the orthologous proteins by choosing the 
"Fungal alignments" option under the "Comparison Resources" menu on the 
locus pages of genes with orthologs in at least one of the other 
species.  SGD plans to add additional comparison information to this 
page in the future.

The Genome Center at Washington University in St. Louis provides an 
additional tool for searching these data:  a  BLAST resource that allows 
users to find regions of homology between S. cerevisiae and the 
additional species S. mikatae, S. kudriavzevii, S. bayanus, S. 
castellii, and S. kluyveri.

Useful URLs:

BLAST page at Wash U:
http://www.genome.wustl.edu/blast/yeast_client.cgi

SGD home page:
http://genome-www.stanford.edu/Saccharomyces/

Cheers,
Kara

*****************************************************
  Kara Dolinski, Database Curator/Developer
  Saccharomyces Genome Database
  Stanford University Med. Ctr.
  Department of Genetics
  Stanford, CA 94305-5120 USA
  phone: (650)725-8956  fax: (650)723-7016
  e-mail:   kara at genome.stanford.edu
  WWW:   http://genome-www.stanford.edu/
*****************************************************

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