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New Saccharomyces Sequences 05/29/02

SGD Sequences yeast-seq at genome.stanford.edu
Wed May 29 15:32:07 EST 2002


=========== Updated Sequence Features/Annotations  =============

D37949      D37949     1778bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae DNA for defective F1F0-ATPase alpha subunit
     precursor, complete cds.
    F1F0-ATPase alpha; defective F1F0-ATPase alpha subunit precursor;
     defective F1F0-ATPase alpha subunit.

D42168      D42168     3488bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae DPB11 DNA for subunit of DNA polymerase II,
     complete cds.
    DPB11; subunit of DNA polymerase II.

D63815      D63815     2264bp    linear   PLN      29-MAY-2002
    Yeast PTK1 gene for PTK1p, complete cds.
    PTK1p; PTK1.

YSCAAR2     D90455     2652bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae AAR2 gene, complete cds.
    AAR2.

YSCARSS1    D13931      570bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences.
    autonomously replicating sequences; ARSs.

YSCARSS2    D13932      640bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences (ARSs).
    autonomously replicating sequences.

YSCARSS3    D13933      692bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences.
    autonomously replicating sequences; ARSs.

YSCARSS4    D13934      528bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences (ARSs).
    autonomously replicating sequences.

YSCARSS5    D13935      441bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences.
    autonomously replicating sequences; ARSs.

YSCARSS6    D13936      558bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences.
    autonomously replicating sequences; ARSs.

YSCARSS7    D13937      433bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences.
    autonomously replicating sequences; ARSs.

YSCARSS8    D13938      609bp    linear   PLN      29-MAY-2002
    S. cerevisiae DNA, autonomously replicating sequences.
    autonomously replicating sequences; ARSs.

YSCBEL2     D12918     4028bp    linear   PLN      29-MAY-2002
    Yeast BEL2 gene for ORF, complete cds.
    transcriptional repressor; BEL2; ORF.

YSCBOI2     D38310     3201bp    linear   PLN      29-MAY-2002
    Yeast BOI2 gene for Boi2p.
    BOI2; Boi2p.

YSCCDC20    D16506     2144bp    linear   PLN      29-MAY-2002
    Yeast CDC20 and CAT3/SNF4 genes.
    ORF1; ORF2; CDC20; CAT3/SNF4.

YSCCHRVIN   D50617 D31600 D44594 D44595 D44596 D44597 D44598 D44599 D44600   270148bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae chromosome VI complete DNA sequence.
    mithochondrial DNA-directed RNA; sulfite reductase flavoprotein; SEC53;
     phosphomannomutase; ACT1; actin; YPT1; GTP-binding protein YPT1; TUB2;
     tubulin beta chain; RPO41; mithochondrial DNA-directed RNA polymerase;
     HAC1; bZIP protein binding to the CRE motif; STE2; pheromone alpha
     factor receptor; FRS2; cytoplasmic phenylalanyl-tRNA synthetase beta
     chain; LPD1; dihydrolipoamide dehydrogenase precursor; MDJ1; MDJ1
     protein precursor; HSP12; 12KD heat shock protein; CDC4; cell division
     control protein 4; SMC1; chromosome segregation protein SMC1; SEC4;
     Ras-related protein; MSH4; MutS protein homolog 4; TyA; transposon
     TY1-17 49.8KD hypothetical protein; TyB; transposon TY1-17 154.0KD
     hypothetical protein; SPB4; rRNA helicase; DEG1; depressed growth-rate
     protein; NIC96; 96KD nucleoporin-interacting component; SUF20; tRNA-Gly;
     SUP11; tRNA-Tyr; CMK1; calcium/calmodulin-dependent protein kinase type
     I; GSY1; glycogen synthase isoform 1; FAB1; FAB1 protein; PES4; DNA
     polymerase epsilon suppressor 4; HIS2; histidinol phosphatase; CDC14;
     cell division control protein 14; SUP6; MET10; SMC2; chromosome
     segregation protein SMC2p; QCR6; ubiquinol-cytochrome C reductase 17KD
     protein; PHO4; phosphate system positive regulatory protein; CDC26; cell
     division control protein CDC26; YMR31; mithochondrial ribosomal protein
     YMR-31 precursor; PRE4; proteosome component PRE4; NIN1; nuclear
     integrity protein 1; HXK1; hexokinase A.

YSCCMK1II   D90375     2243bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae CMK1 gene for CaM kinase II, complete cds.
    protein; CMK1; CaM kinase; calmodulin-dependent protein kinase; CaM
     kinase II.

YSCCMK2II   D90376     1601bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae CMK2 gene for CaM kinase II, complete cds.
    protein; CMK2; CaM kinase II; calmodulin-dependent protein kinase.

YSCCWP1     D37975     2154bp    linear   PLN      29-MAY-2002
    Yeast CWP1 gene for cell wall protein, complete cds.
    cell wall glycoprotein gp40; cell wall protein;
     glycosylphosphatidylinositol anchored protein; mannose-rich protein;
     serine-rich protein; CWP1; unnamed.

YSCCYS4     D16502     4008bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae DNAs for cystathionine beta-synthase (ORF1) and
     ORF2, complete cds.
    ORF1; ORF2; cystathionine beta-synthase; CYS4.

YSCESR1     D11088     8700bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae genes for Cks1 protein, Esr1 protein, ORF,
     partial and complete cds.
    DNA binding protein; CKS1; Cks1 protein; ESR1; Esr1 protein; ORF.

YSCGRPEH    D26059     1038bp    linear   PLN      29-MAY-2002
    Yeast gene for GrpE homologue, complete cds.
    GrpE homologue; 'GrpE homologue'.

YSCGSH1     D90220     4410bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae GSH1 gene for gamma-glutamylcysteine synthetase,
     complete cds.
    GSH1; gamma-glutamylcysteine synthetase.

YSCGTR1     D10018     3294bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae GTR1 gene for GTP binding protein, complete cds.
    GTR1; GTP binding protein.

YSCHIT1     D11103     3536bp    linear   PLN      29-MAY-2002
    S. cerevisiae genes for protein and tRNA-Arg, complete sequence.
    tRNA-Arg; HIT1; 'Protein'; HSX1.

YSCHTR1     D25541     3769bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae HTR1 gene, complete cds.
    HTR1.

YSCLTG3     D16304     1779bp    linear   PLN      29-MAY-2002
    Yeast LTG3 gene, complete cds.
    low temperature growth; LTG3 protein; amino acid permease-homologue;
     LTG3.

YSCMID1P    D32133     2654bp    linear   PLN      29-MAY-2002
    Yeast gene for Mid1p.
    M1D1; Midlp; Mid1p.

YSCMKK2     D13785     2164bp    linear   PLN      29-MAY-2002
    S.cerevisiae gene for Mkk2 protein kinase, complete cds.
    Mkk2 protein kinase; Ste7-like kinase; MKK2/SSP33.

YSCMKS1     D13715     2450bp    linear   PLN      29-MAY-2002
    Yeast gene for negative regulator of Ras-cAMP pathway (MKS1), complete
     cds.
    MKS1; negative regulator of Ras-cAMP pathway; negative regulator of
     Ras-cAMP pathway (MKS1).

YSCMRE11    D11463     4324bp    linear   PLN      29-MAY-2002
    S. cerevisiae MRE11 gene for Mre11 protein, complete cds.
    MRE11; Mre11.

YSCMRE2     D11461     3436bp    linear   PLN      29-MAY-2002
    Yeast gene for ribonucleoprotein homologue Mre2 protein, complete cds.
    ribonucleoprotein; Mre2 protein; meiotic recombination; MRE2.

YSCMRFI     D26606     2160bp    linear   PLN      29-MAY-2002
    Yeast gene for MRF1 (mitochondrial respiratory function 1), complete cds.
    MRF1; mitochondrial respiratory function 1; MRF1(mitochondrial
     respiratory function 1).

YSCNBP2     D43693     1005bp    linear   PLN      29-MAY-2002
    Yeast NBP2 gene for Nap1-binding protein, complete cds.
    NBP2; Nap1-binding protein.

YSCNIN1     D10515     2354bp    linear   PLN      29-MAY-2002
    Yeast DNA for NIN1 gene.
    NIN1; NIN1 protein.

YSCNPS1     D10595 D01087     5211bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae NPS1 gene for nuclear protein, complete cds.
    nuclear protein; NPS1.

YSCNRK1     D29980     4601bp    linear   PLN      29-MAY-2002
    Yeast NRK1 gene for N-rich kinase 1, complete cds.
    ATP-binding; N-rich kinase 1; NRK-1.

YSCPDA      D10865     2774bp    linear   PLN      29-MAY-2002
    Yeast genes for pyruvate dehydrogenase alpha and ORFs.
    pyruvate dehydrogenase alpha; ORF1; ORF2.

YSCPES4     D26442     2245bp    linear   PLN      29-MAY-2002
    Yeast gene for PES4 PAB-like protein, complete cds.
    DNA polymerase epsilon suppressor 4; PES4 PAB-like protein; PES4(DNA
     Polymerase epsilon suppressor 4).

YSCPFK1AA   M26943     4202bp    linear   PLN      15-MAY-2002
    Saccharomyces cerevisiae phosphofructokinase, alpha subunit (PFK1) gene,
     complete cds.
    phosphofructokinase; PFK1; phosphofructokinase, alpha subunit.

YSCPFK2AA   M26944     4142bp    linear   PLN      15-MAY-2002
    Saccharomyces cerevisiae phosphofructokinase, beta subunit (PFK2) gene,
     complete cds.
    phosphofructokinase; PFK2; phosphofructokinase, beta subunit.

YSCPHO81    D13228     5100bp    linear   PLN      29-MAY-2002
    Yeast PHO81 gene.
    PHO81.

YSCPHO84    D90346     3867bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae PHO84 gene for inorganic phosphate transporter,
     complete cds.
    PHO84; inorganic phosphate transporter.

YSCPOP2A    D12808     1870bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae POP2 gene.
    POP2 protein; glucose-derepression.

YSCPOP2S    D12807     1837bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae POP2 gene.
    POP2 protein; glucose-derepression.

YSCPP1A     M77175     3064bp    linear   PLN      15-MAY-2002
    Saccharomyces cerevisiae protein phosphatase-1 (GLC7) gene, complete cds.
    protein phosphatase-1; GLC7.

YSCRAD51    D10023     3724bp    linear   PLN      29-MAY-2002
    S.cerevisiae Rad51 protein gene.
    Rad51 protein; RAD51.

YSCRAD55    D10481     3022bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae RAD55 gene, complete cds.
    DNA binding; radiation sensitive; recombination deficient; RAD55.

YSCRER1     D28552     1147bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae DNA for Rer1p, complete cds.
    Rer1p; membrane protein retention; RER1.

YSCRFC2     D28499     3421bp    linear   PLN      29-MAY-2002
    Yeast RFC2 gene for Rfc2 protein (a subunit of replication factor C),
     complete cds.
    Rfc2 protein; replication factor C; RFC2.

YSCRGR1     D90051     3866bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae gene for RGR1 protein, complete cds.
    RGR1; glucose repression; RGR1 protein.

YSCRHO3     D10006      720bp    linear   PLN      29-MAY-2002
    qeast RHO3 gene, complete cds.
    GTP binding protein; ras superfamily genes; RHO3; RHO3p.

YSCRHO4     D10007      720bp    linear   PLN      29-MAY-2002
    Yeast RHO4 gene, complete cds.
    GTP binding protein; ras superfamily genes; RHO4; RHO4p.

YSCSBE2     D50084     2989bp    linear   PLN      29-MAY-2002
    Yeast SBE2 gene for ORF, complete cds.
    SBE2.

YSCSGV1     D90317     2894bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae SGV1 gene for SGV1 kinase.
    SGV1; SGV1 kinase.

YSCSMS1     D29964     1434bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae SMS1 gene for serine-rich transmembrane protein,
     complete cds.
    multi-copy suppressor; ts-htr1 disruptant; SMS1; serine-rich
     transmembrane protein.

YSCSSP31    D10389 D90446     4985bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae gene for Ssp31 protein kinase, complete cds.
    SSP31; Ssp31 protein kinase.

YSCSSP32    D13001     2656bp    linear   PLN      29-MAY-2002
    Yeast Mkk1/SSP32 gene for Mkk1 protein kinase, complete cds.
    protein kinase; SSP32; Ssp32 protein kinase.

YSCSTA1A    D00428      385bp    linear   PLN      29-MAY-2002
    Saccharomyces diastaticus gene for putative glucoamylase, partial cds.
    STA1; glucoamylase; putative glucoamylase.

YSCSTE5     D12917     3795bp    linear   PLN      29-MAY-2002
    Yeast gene for a component of the pheromone signal transduction pathway,
     complete cds.
    mating defect; pheromone signal transduction pathway; STE5; a component
     of the pheromone signal transduction pathway.

YSCSTM1     D32208     1275bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae gene for Stm1p, complete cds.
    temperature sensitive mutant tom1 gene; histone H1-homolog; STM1; Stm1p.

YSCTHI6A    D31908     2450bp    linear   PLN      29-MAY-2002
    Yeast THI6 gene for thiamin biosynthetic bifunctional enzyme (TMP
     pyrophosphorylase/hydroxyethylthiazole kinase), complete cds.
    thiamin biosynthetic bifunctional enzyme; TMP pyrophosphorylase;
     thiamin-phosphate pyrophosphorylase; hydroxyethylthiazole kinase;
     4-methyl-5-beta-hydroxyethylthiazole kinase; Th-kinase; THI6.

YSCTOM1     D63905     3750bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae TOM1 gene for ubiquitin ligase, partial cds.
    TOM1; ubiquitin ligase.

YSCTPPK     D14417     2518bp    linear   PLN      29-MAY-2002
    Yeast (S. cerevisiae) THI80 gene for thiamin pyrophosphokinase, complete
     cds.
    thiamin pyrophosphokinase; THI80.

YSCUAS2     D00430      513bp    linear   PLN      29-MAY-2002
    Saccharomyces diastaticus STA1 gene, upstream activation sequence (UAS2).
    STA1; glucoamylase; upstream activation sequence; STA1 gene.

YSCUSA1     D00429      668bp    linear   PLN      29-MAY-2002
    Saccharomyces diastaticus STA1 gene, upstream activation sequence (UAS1).
    STA1; glucoamylase; upstream activation sequence.

YSCYL10A    D14675     2116bp    linear   PLN      29-MAY-2002
    S.cerevisiae gene for ribosomal protein YL10, complete cds.
    ribosomal protein YL10; YL10A.

YSCYML33    D90217     1607bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae gene for large subunit of mitochondrial
     ribosomal protein YmL33, complete cds.
    large subunit of mitochondrial ribosomal protein YmL33.

YSCYS11A    D00724     1893bp    linear   PLN      29-MAY-2002
    Saccharomyces cerevisiae YS11 gene, complete cds.
    YS11; YS11A gene; ribosomal protein.

YSCYS29A    D14676     1004bp    linear   PLN      29-MAY-2002
    S.cerevisiae YS29A gene for ribosomal protein YS29, complete cds.
    ribosomal protein YS29; YS29A.

YSCYS29B    D14677      937bp    linear   PLN      29-MAY-2002
    S.cerevisiae YS29B gene for ribosomal protein YS29, complete cds.
    ribosomal protein YS29; YS29B.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI query (Entrez)
e-mail server, query at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
     EBI (EMBL):  http://www.ebi.ac.uk/embl/Access/index.html
           DDBJ:  http://www.ddbj.nig.ac.jp/searches-e.html

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