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New Saccharomyces Sequences 05/06/00

SGD Sequences yeast-seq at genome.stanford.edu
Sat May 6 06:58:17 EST 2000

==================== Updated DNA Sequences =====================

SCE9781     U18916 L11119 L11120 U00092 U75972    68301bp    DNA      PLN      01-MAY-2000
    Saccharomyces cerevisiae chromosome V cosmids 9781, 8198,  9115, 9981,
     and lambda clones 3955 and 6052.
    PAK1 (DNA polymerase alphaRSP5 (suppressor of mutations in SPT3); FLO8;
     Flo8p: transcriptional activator of FLO1; YER109c; Yer109p; KAP123;
     Kap123p: Karyopherin beta 4; SWI4; Swi4p: transcription factor; USS1;
     Uss1p: core protein of small nuclear ribonucleoprotein; YER113C;
     Yer113cp; BOI2; Boi2p; SPR6; Spr6p; YER116C; Yer116cp; RPL17B; Rpl17bp:
     Ribosomal protein, large subunit; SSU81; Ssu81p: Transmembrane
     osmosensor; YER119C; Yer119cp; YER119C-A; Yer119c-ap; SCS2; Scs2p;
     YER121W; Yer121wp; GLO3; Glo3p; YCK3; Yck3p: Plasma membrane-bound
     casein kinase I homolog; YER124C; Yer124cp; RSP5; Rsp5p; YER126C;
     Yer126cp; YER127W; Yer127wp; YER128W; Yer128wp; PAK1; Pak1p: DNA
     polymerase alpha suppressing protein kinase; YER130C; Yer130cp; RPS26B;
     Rps26bp; SNR4; YER132C; Yer132cp; GLC7; Glc7p: protein phosphatase type
     1; tRNA-His; tRNA-Lys; YER134C; Yer134cp; YER135C; Yer135cp; tRNA-Val;
     GDI1; Gdi1p: secretory pathway GDP dissociation inhibitor; YER137C;
     Yer137cp; SCR1.

=========== Updated Sequence Features/Annotations  =============

S48552      S48552     4740bp    DNA      PLN      04-MAY-2000
    orf YCR021. . .orf YCR041 [Saccharomyces cerevisiae, Genomic, 3 genes,
     4740 nt].
    orf YCR021; CDC10; orf YCR041.

S58126      S58126    16956bp    DNA      PLN      04-MAY-2000
    LEU1-ATE1 loci: LEU1. . .YGL029 [Saccharomyces cerevisiae, Genomic, 14
     genes, 16956 nt].
    LEU1; YGL021; SCl1; YGL022; YGL025; PDR1; YGL023; YGL026; YGL024; PDR6;
     YGL027; YGL028; ATE1; YGL029.

SCU05820    U05820     4243bp    DNA      PLN      03-MAY-2000
    Saccharomyces cerevisiae DA-box protein Smc2p (SMC2) gene, complete cds,
     and assimilatory sulfite reductase (MET10) gene, partial cds.
    putative ribosomal protein; Smc2p; DA-box peptide; MET10; assimilatory
     sulfite reductase.

YSCL8084    U19729 Y13138    40197bp    DNA      PLN      03-MAY-2000
    Saccharomyces cerevisiae chromosome XII cosmid 8084.
    YLR387C; Ylr387cp; YLR388W; Ylr388wp; SNR34; STE23; Ste23p; ECM19;
     Ecm19p; YLR391W-A; Ylr391w-ap; YLR392C; Ylr392cp; ATP10; Atp10p:
     essential for the assembly of the mitochondrial ATPase complex; YLR394W;
     Ylr394wp; COX8; Cox8p: cytochrome c oxidase polypeptide VIII; VPS33;
     Vps33p; AFG2; Afg2p; SKI2; Ski2p: Antiviral protein; BDF1; Bdf1p;
     YLR400W; Ylr400wp; YLR401C; Ylr401cp; YLR402W; Ylr402wp; SFP1; Sfp1p;
     YLR404W; Ylr404wp; YLR405W; Ylr405wp; YLR406C; Ylr406cp: member of L31E
     ribosomal protein family; YLR407W; Ylr407wp; YLR408C; Ylr408cp; YLR409C;

YSCLTESPO   L05146 L04459 L05027 M36073 M98389 S93805 U00091    29410bp    DNA      PLN      03-MAY-2000
    Saccharomyces cerevisiae chromosome I left arm sequence.
    CCR4; CYS3; NTG1; DEP1; TPD3; carbon catabolite repressor; cystathionine
     gamma-lyase; protein phosphatase 2A regulatory subunit A;
     serine/threonine kinase; PMT2; Pmt2p: protein O-D-mannosyltransferase;
     FUN26; Fun26p; Ccr4p: Carbon catabolite repressor protein; ATS1; Ats1p;
     FUN30; Fun30p; YAL018C; Yal018cp; FUN31; Fun31p: Putative
     serine/threonine kinase; Tpd3p: protein phosphatase 2A regulatory
     subunit A; Ntg1p: endonuclease III-like glycosylase 1; YAL014C;
     Yal014cp; Dep1p: Regulator of phospholipid metabolism; Cys3p:
     cystathionine gamma-lyase; YAL011W; Yal011wp; MDM10; Mdm10p:
     Mitochondria outer membrane protein.

YSCNPTRPBX  L11274     1838bp    DNA      PLN      03-MAY-2000
    Saccharomyces cerevisiae nicotinate phosphoribosyltransferase (NPT1)
     gene, partial cds; subunit ABC10beta (RPB10) gene, complete cds; and
     unknown gene.
    NPT1; nicotinate phosphoribosyltransferase; RPB10; subunit ABC10beta.

Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI query (Entrez)
e-mail server, query at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/embl/Access/index.html
           DDBJ:  http://www.ddbj.nig.ac.jp/searches-e.html

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