IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

New Saccharomyces Sequences 04/18/00

SGD Sequences yeast-seq at genome.stanford.edu
Tue Apr 18 09:57:50 EST 2000


=========== Updated Sequence Features/Annotations  =============

AB027253    AB027253     3069bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae gene for DNA polymerase V, complete cds, Point
     mutation D625N.
    DNA polymerase V; POL5.

D37949      D37949     1778bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae DNA for defective F1F0-ATPase alpha subunit
     precursor, complete cds.
    F1F0-ATPase alphadefective F1F0-ATPase alpha subunit precursor; defective
     F1F0-ATPase alpha subunit.

D88458      D88458     1777bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae DNA for defective F1F0-ATPase alpha subunit
     precursor, complete cds.
    F1F0-ATPase alphadefective F1F0-ATPase alpha subunit precursor.

M24080      M24080      258bp    DNA      PLN      13-APR-2000
    Saccharomyces cerevisiae alpha-1 mating factor (MF-alpha-1) gene, partial
     cds.
    MF-alpha-1; alpha-1 mating factor.

S55518      S55518     2657bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae RF1095, RF435, and inner membrane protease 1
     (PET2858) genes, complete cds.
    RF1095; RF435; PET2858; inner membrane protease 1.

S57516      S57516      753bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae uracil phosphoribosyl transferase (FUR1) gene,
     complete cds.
    FUR1; uracil phosphoribosyl transferase.

S63468      S63468     3382bp    DNA      PLN      13-APR-2000
    Saccharomyces cerevisiae delta class phosphoinositide-specific
     phospholipase C homolog (PLC1) gene, complete cds.
    PLC1; delta class phosphoinositide-specific phospholipase C homolog.

S66436      S66436     1539bp    DNA      PLN      13-APR-2000
    Saccharomyces cerevisiae NAD-linked glutamate dehydrogenase (GDH2) gene,
     promoter region and partial cds.
    GDH2; NAD-linked glutamate dehydrogenase.

S76640      S76640      765bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae bI4 RNA maturase gene, complete cds.
    bI4 RNA maturase.

S77888      S77888     1316bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae mitoribosomal protein YmL27 (MRP-L27) gene,
     complete cds;  and mitoribosomal protein YmL27 genes, partial cds;
     mitochondrial genes for mitochondrial products.
    MRP-L27; mitoribosomal protein YmL27; ORF72 downstream to MRP-L27; ORF27
     downstream to MRP-L27; YmL27.

S80483      S80483       51bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae glyoxalase I (GLO1) gene, partial cds.
    GLO1; glyoxalase I.

YSCADE1B    M67445     4101bp    DNA      PLN      12-APR-2000
    S.cerevisiae FUN2 gene, 5' end,
     phosphoribosyl-amino-imidazolesuccinocarbozamide synthetase (ADE1) gene,
     putative protein kinase (FUN52) gene, complete cds, and CDC15 gene, 3'
     end.
    phosphoribosyl-amino-imidazolesuccinocarboxamideCDC15 product; FUN2;
     ADE1; phosphoribosyl-amino-imidazolesuccinocarboxamide synthetase;
     FUN52; protein kinase; CDC15.

YSCCHRVIN   D50617 D31600 D44594 D44595 D44596 D44597 D44598 D44599 D44600   270148bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae chromosome VI complete DNA sequence.
    mithochondrial DNA-directed RNAsulfite reductase flavoprotein; SEC53;
     phosphomannomutase; ACT1; actin; YPT1; GTP-binding protein YPT1; TUB2;
     tubulin beta chain; RPO41; mithochondrial DNA-directed RNA polymerase;
     HAC1; bZIP protein binding to the CRE motif; STE2; pheromone alpha
     factor receptor; FRS2; cytoplasmic phenylalanyl-tRNA synthetase beta
     chain; LPD1; dihydrolipoamide dehydrogenase precursor; MDJ1; MDJ1
     protein precursor; HSP12; 12KD heat shock protein; CDC4; cell division
     control protein 4; SMC1; chromosome segregation protein SMC1; SEC4;
     Ras-related protein; MSH4; MutS protein homolog 4; TyA; transposon
     TY1-17 49.8KD hypothetical protein; TyB; transposon TY1-17 154.0KD
     hypothetical protein; SPB4; rRNA helicase; DEG1; depressed growth-rate
     protein; NIC96; 96KD nucleoporin-interacting component; SUF20; SUP11;
     CMK1; calcium/calmodulin-dependent protein kinase type I; GSY1; glycogen
     synthase isoform 1; FAB1; FAB1 protein; PES4; DNA polymerase epsilon
     suppressor 4; HIS2; histidinol phosphatase; CDC14; cell division control
     protein 14; SUP6; MET10; SMC2; chromosome segregation protein SMC2p;
     QCR6; ubiquinol-cytochrome C reductase 17KD protein; PHO4; phosphate
     system positive regulatory protein; CDC26; cell division control protein
     CDC26; YMR31; mithochondrial ribosomal protein YMR-31 precursor; PRE4;
     proteosome component PRE4; NIN1; nuclear integrity protein 1; HXK1;
     hexokinase A.

YSCCNBI     M87508      812bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae calcineurin B (CNB1) gene, 5' end cds.
    calcineurin B; CNB1.

YSCCOQ2A    M81698     2195bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae para-hydroxybenzoate:polyprenyl transferase
     (COQ2) gene, complete cds.
    para-hydroxybenzoate:polyprenyl transferase; COQ2;
     p-hydroxybenzoate:polyprenyl transferase.

YSCEFB1DNA  D14080 X70252     1238bp    DNA      PLN      14-APR-2000
    Yeast DNA for elongation factor-1 beta, complete cds.
    elongation factor-1 beta; EFB1.

YSCF4121F   D44598    18837bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae chromosome VI phage 4121.
    GTP-binding proteinDNA-directed RNA polymerase mitochondrial; ACT1;
     actine; YPT1; GTP-BINDING PROTEIN YPT1(YP2); TUB2; TUBULIN BETA CHAIN;
     RPO41; DNA-DIRECTED RNA POLYMERASE MITOCHONDRIAL.

YSCF9765J   D44602    30833bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae chromosome VI cosmid 9765.
    cell divisionDA-box protein Smc2p; cell division control protein; HIS2;
     histidinolphosphatase; CDC14; unkown; MET10; sulfite reductase (NADPH)
     flavoprotein component; SMC2; sup6; tRNA-Tyr; QCR6; subunit Vl of
     ubiquinol-cytochrome c reductase; PHO4; phosphate system positive
     regulatory protein; CDC26; cell division control protein 26.

YSCHTB1A    M37743      370bp    mRNA     PLN      12-APR-2000
    S.cerevisiae histone HTB1 mRNA, 3' end.
    histone HTB1.

YSCMTATPSA  M36379     2820bp    DNA      PLN      12-APR-2000
    Yeast mitochondrial oxi3 gene, 3' end, ATPase subunit 3 (aap1) and ATPase
     subunit 6 (oli2) gene, complete cds.
    oli2 region.

YSCMTCCO2A  D55725      467bp    DNA      PLN      08-APR-2000
    Yeast mitochondrial gene for cytochrome c oxidase subunit II, partial
     cds.
    cytochrome c oxidase subunit II.

YSCMTENDOS  M63839     1671bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae mitochondrial sequence-specific endonuclease
     maturase-like subunit (Endo.SceI) gene, partial cds and ATPase complex
     subunit 6 (oli2) gene, 3' end.
    ATPase subunit 6; sequence-specific endonuclease; oli2; Endo.SceI;
     endonuclease.

YSCMTHMG    M73753     1194bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae mitochondrial protein gene, complete CDS.
    mitochondrial protein.

YSCMTORIK   M11449     2468bp    DNA      PLN      12-APR-2000
    Yeast mitochondrial ori2-ori7 region DNA with putative peptide.

YSCMTRF2A   M25084      316bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae open reading frame RF2 gene, complete cds.
    open reading frame.

YSCMTRGF1   M11280     1431bp    DNA      PLN      12-APR-2000
    Yeast (S.cerevisiae) mitochondrial 21S rRNA gene, r1 intron encoding a
     putative transposase.
    21S ribosomal RNA; gene conversion; ribosomal RNA; transposase.

YSCORFAB    M88605     1364bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae ORF gene, partial cds.

YSCPOP2S    D12807     1837bp    DNA      PLN      14-APR-2000
    Saccharomyces cerevisiae POP2 gene.
    POP2 protein; glucose-derepression.

YSCRAD18A   M36405     2300bp    DNA      PLN      12-APR-2000
    S.cerevisiae DNA repair protein (RAD18) gene, complete cds.
    DNA repair protein.

YSCSDC25    M26647 M31771     5064bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae SDC25 gene, complete cds.
    Ras protein; SDC25 gene; cell division cycle protein.

YSCSPO7A    M36073     1846bp    DNA      PLN      12-APR-2000
    S.cerevisiae SPO7 gene, complete cds, and FUN14 and FUN37 genes, 5' end.
    antimutator phenotype; premeiotic DNA replication.

YSCTHI6A    D31908     2450bp    DNA      PLN      14-APR-2000
    Yeast THI6 gene for thiamin biosynthetic bifunctional enzyme (TMP
     pyrophosphorylase/hydroxyethylthiazole kinase), complete cds.
    thiamin biosynthetic bifunctional enzyme; TMP pyrophosphorylase;
     thiamin-phosphate pyrophosphorylase; hydroxyethylthiazole kinase;
     4-methyl-5-beta-hydroxyethylthiazole kinase; Th-kinase; THI6.

YSCTY31A    M34549     5510bp    DNA      PLN      12-APR-2000
    Saccharomyces cerevisiae retrotransposon Ty3-1 GAG3 gene encoding capsid
     and nucleocapsid, POL3 gene encoding integrase, protease and reverse
     transcriptase; transfer RNA (tRNA-Cys) (from S.cerevisiae) gene.
    reverseLTR; capsid; integrase; protease; retrotransposon; tRNA-Cys; gag3;
     capsid protein; nucleocapsid; POL3; reverse transcriptase.

YSCYL16A    D10225     2710bp    DNA      PLN      14-APR-2000
    Yeast genomic DNA for ribosomal protein YL16, complete cds.
    ribosomal protein; YL16A; ribosomal protein YL16.

YSCYL16B    D10226     1594bp    DNA      PLN      14-APR-2000
    Yeast genomic DNA for ribosomal protein YL16, complete cds.
    ribosomal protein; YL16B; ribosomal protein YL16.

YSCYL8B     D25232     1919bp    DNA      PLN      14-APR-2000
    Yeast YL8B gene for ribosomal protein YL8, complete cds (exon1, exon2,
     exon3).
    YL8B; ribosomal protein YL8.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI query (Entrez)
e-mail server, query at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/embl/Access/index.html
           DDBJ:  http://www.ddbj.nig.ac.jp/searches-e.html
---





______________O_________oO_____________oO______o_______oO___________________
YEAST bionet newsgroup see: http://www.bio.net/hypermail/YEAST/
YEAST e-mail: messages sent to yeast at net.bio.net
subscribe: e-mail biosci-server at net.bio.net with: subscribe yeast
unsubscribe: e-mail biosci-server at net.bio.net with: unsubscribe yeast
YEAST on the WWW: http://genome-www.stanford.edu/Saccharomyces/VL-yeast.html
problems with the YEAST newsgroup? E-mail the moderator: francis at cmmt.ubc.ca







More information about the Yeast mailing list

Send comments to us at biosci-help [At] net.bio.net