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[pombelist]

Valerie Wood val at sanger.ac.uk
Tue Oct 26 09:17:55 EST 1999


Here are the current totals figures, the 'in progress' totals have
dropped a little since Edinburgh. This is due to a slight 
overestimation of these sizes, and hence will probably result in a 
correspondingly lower overall final total.

 
 

  *************************** POMBELIST *************************
   izosaccharomycespombeschizosaccharomycespombeschizosaccharomyce
   spombeschizosaccharomycespombeschizosaccharomycespombeschizosac
   charomycespombeschizosaccharomycespombeschizosaccharomycespombe
   schizosaccharomycespombeschizosaccharomycespombeschizosaccharom
   ycespombeschizosaccharomycespombeschizosaccharomycespombeschizo
   ************* Schizosaccharomyces pombe mailing list **********



          ********  GENOME DATA -SEQUENCING TOTALS  ******

          ************************************************



		 Chr I		Chr II		Chr III		Culm.
 EMBL	 	 3995534	3638036		2146367		9779937
 finished 	 230880		84108		39784		10134709
 contiguous 	 144800		39600		0		10319109
 in progress	 850700		356400		155700		11681909

 totals		 5221914	4118144		2341851		11681909
		


 View the EMBL entries in chromosomal order:
 http://www.sanger.ac.uk/Projects/S_pombe/Genomic_sequence.shtml
 All sequence data can be searched via the S. pombe blast server at:
 http://www.sanger.ac.uk/Projects/S_pombe/blast_server.shtml


          *****    THIS MONTHS SUBMISSION KEYWORDS    *****

          *************************************************

   EMBL:SPAC1250 
KW   60s ribosomal protein l30; bromodomain; cell cycle protein kinase;
KW   helicase C-term domain; methyltransferase; SNF2 family;
KW   transcriptional regulator;
KW   ubiquitin-conjugating enzyme e2-16 kd (EC 6.3.2.19); win1.


   EMBL:SPAC1952 
KW   acetyl-coa hydrolase; acetyltransferase; bromodomain; coiled-coil;
KW   conserved hypothetical; DNA repair protein; major facilitator
superfamily;
KW   rad1; ribosomal protein; TBC domain;
KW   transcriptional activator GCN5 homolog; ure1; urease.


   EMBL:SPAC1B9
KW   cAMP-dependent protein kinase; mating;
KW   nuclear transport factor, NTF2 homolog; sck1; similarity to yeast
SSF1.


   EMBL:SPAC22F8
KW   1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase 1 (ec
3.1.4.11);
KW   actin-like protein; alpha,alpha-trehalose-phosphate synthase; C2
domain;
KW   conserved hypothetical protein; efhand;
KW   human spliceosome associated protein 145 (SAP 145) homolog;
KW   myb-like dna-binding protein;
KW   Phosphatidylinositol-specific phospholipase C, X and Y domain;
plc1;
KW   Proteasome A-type and B-type; proteasome component c5;
KW   similar to yeast component of COPII coat of ER-Golgi vesicles,
SEC24;
KW   Trehalose-6-phosphate synthase domain.

 
   EMBL:SPAC323
KW   ABC_tran domain; atp transporter; conserved hypothetical protein;
KW   metal transport atp-binding protein; methyltransferase;
KW   proteasome component PUP2 homolog; ThiF family;
KW   Uncharacterised protein family domian; UPF0013 domain.


   EMBL:SPAC630
KW   act2; actin-like protein 3; c-4 methyl sterol oxidase;
KW   conserved hypothetical; gtpase activating protein; protein;
KW   similar to yeast cell division control protein CDC1; TBC domain;
KW   tRNA Pro anticodon TGG; Trp-Asp repeat; tuberin; tup1; WD domain;
KW   WD40 domain.

 
   EMBL:SPAC926
KW   5s rRNA; acyl transferase; dnaj; dynein light chain; EF hand;
KW   fatty acid synthase, subunit beta; heat shock protein 90 homolog;
hsp90;
KW   Leucine rich repeat; MaoC like; myosin regulatory light chain;
KW   phosphotyrosine protein phosphatase; stp1; swo1.

 
   EMBL:SPBC106
KW   60s ribosomal protein l25-a; ada1; Adenosine/AMPdeaminase; amp
deaminase;
KW   camp-dependent protein kinase; cct4; chaperonin; chaperonin subunit
cct4;
KW   cut4; exocyst complex; homoserine o-acetyltransferase; idi1;
KW   isopentenyl-diphosphate delta-isomerase; mph1; pka1; PROS28 family;
KW   proteasome component; protein kinase homolog; RNA binding protein;
rpl25a;
KW   tpk.

 
   EMBL:SPBC17G9
KW   40s ribosomal protein s24b; 60s ribosomal protein L11; biotin
lipoyl;
KW   biotin-requiring; carboxylase; csx2; elongation factor Tu family;
GTP EFTU;
KW   GTPase activating; helicases conserved c-terminal domain;
KW   lysyl-trna synthetase; nucleoporin; peptidyl prolyl cis-trans
isomerase;
KW   PH domain; pre-mrna splicing factor atp-dependent rna helicase;
KW   RNA recognition motif; RNP domain; translation initiation factor.

 
   EMBL:SPBC1861
KW   abp2; ars binding protein 2; carbohydrate kinases signature 1;
KW   conserved hypothetical protein; elongin c homolog;
KW   eukaryotic protein kinase; leucine rich repeat;
KW   regulator of transcription elongation; RNA recognition motif (x4);
KW   RRM, RBD, or RNP domain; ser/thr protein kinase;
KW   similar to C-term of yeast U4/U6 splicing factor PRP24; skp1 family
domain;
KW   u2 snrnp-specific a' protein.

 
   EMBL:SPBC409
KW   6,7-dimethyl-8-ribityllumazine synthase; acidic c-terminus protein;
KW   conserved hypothetical NifU-like; DMRL synthase family; EF-G;
KW   eukaryotic translation initiation factor 4e;
KW   heat shock hsp70 proteins family signature 1;
KW   intron tRNA Arg anticodon CCT; low-complexity gene-free region;
KW   lumazine synthase; metaxin; mitochondrial elongation factor g;
KW   mitochondrial outer membrane protein; NifU-like domain;
KW   phosphatidic acid phosphatase;
KW   phosphoribosylamidoimidazole-succinocarboxamide synthase;
KW   protein kinase wis1p; Ribosomal protein S17 domain; SAICAR
synthetase;
KW   similar to yeast protein translocation protein SEC66; Skp1 family;
KW   skp1 homolog; spc2; tRNA Arg anticodon CCT;
KW   Ubiquitin carboxyl-terminal hydrolase family 1 domain;
KW   ubiquitin carboxyl-terminal hydrolase-like protein; wis1.

 
   EMBL:SPBC577
KW   60s ribosomal protein l38; conserved hypothetical;
KW   Domain of unknown function; G-beta repeat;
KW   Inositol polyphosphate phosphatase family; phosphatidylinositol
4-kinase;
KW   thioredoxin-like protein; Trp-Asp repeat protein; WD domain; WD40;
KW   yeast proteasome component PRE4 homolog.

 
   EMBL:SPCC16A11
KW   alpha 1,2 mannosyltransferase; cdc21; cytochrome b5; dim1; G-beta
repeat;
KW   heme-binding domain; mitochondrial 60s ribosomal protein;
KW   mitochondrial import inner membrane translocase subunit; mitosis
protein;
KW   PX domain; ubiquitin carboxyl-terminal hydrolase; WD-repeat; WD40.

 
   EMBL:SPCC830
KW   calcineurin b subunit; conserved hypothetical; DNA J; EF hand (x4);
KW   pre-tRNA/pre-rRNA processing; protein kinase; psi; SNF2/RAD54
family;
KW   TF1 LTR; transcriptional regulator; transport protein; wtf
pseudogene.

 
   EMBL:SPCP1E11
KW   adaptin N; ankyrin-repeat; conserved hypothetical;
KW   eukaryotic protein kinase domain; gamma-adaptin; ribosomal protein
rpa5;
KW   serine/threonine-protein kinase; sterol o-acyltransferase 2; TF1
LTR;
KW   ysprla5.
 
 
   EMBLNEW:SPAC1420
KW   chaperonin family; cytochrome c oxidase assembly protein; PCI
domain;
KW   proteasome subunit; t-complex protein 1, epsilon subunit; TCP1; TF1
LTR.


   EMBLNEW:SPAC16
KW   conserved hypothetical; dihydroorotase; pre-mRNA splicing factor;
KW   ras family; rho2; RNA recognition motif; RNP domain; RRM; srp2;
KW   zinc finger.


   EMBLNEW:SPAC1639
KW   GNS1/SUR4 family; potassium transport; SUR4 family protein.


   EMBLNEW:SPAC1786
KW   cut11; lysophospholipase precursor; nuclear envelope protein.


   EMBLNEW:SPAC1805
KW   40s ribosomal protein s26; casein kinase I homolog ckI3;
KW   chromosome region maintenance protein 1; cki3; crm1;
KW   delta-aminolevulinic acid dehydratase;
KW   electron transfer flavoprotein beta-subunit; HECT-domain; hem2;
KW   methionyl-trna formyltransferase; Mtap PNP; nuclear pore protein;
KW   phosphorylases family 2; purine nucleoside phosphorylase;
KW   ribosomal protein l14; serine/threonine-protein kinase;
KW   ubiquitin fusion protein; ubiquitin-protein ligase.


   EMBLNEW:SPAC513
KW   elongation factor 2; eft2; m-factor precursor; mfm2;
KW   alpha-mannosidase; dimeric dihydrodiol dehydrogenase;
KW   oxidoreductase family; cinnamoyl-coa reductase.


   EMBLNEW:SPAC806
KW   40s ribosomal protein s26; conserved hypothetical protein; G-beta
repeat;
KW   glycosyltransferase; low complexity gene-free region; ndk1;
KW   nucleoside diphosphate kinase; porphobilinogen deaminase; rps26;
KW   SUR4 family protein; WD domian; WD40.


   EMBLNEW:SPAC821
KW   atpase.0; Cell division protein; Cu,Zn-superoxide dismutase;
KW   fungal Zn(2)-Cys(6) zinc-finger; G-beta repeat;
KW   gamma-glutamyl phosphate reductase; LTR; orb6; pseudogene; septin
homolog;
KW   serine/threonine-protein kinase; slp1; sod1; spn2; U3 small nuclear
RNA;
KW   WD domain; wd-domain protein.


   EMBLNEW:SPAC824
KW   chromo shadow domain; gtpase activating protein;
guanosine-diphosphatase;
KW   hydroxyacylglutathione hydrolase; mating type;
KW   negative regulator of vesicle formation; swi6;
KW   vacuolar protein sorting-associated protein; WD repeat protein;
KW   WD40, WD domain, G-beta repeat.


   EMBLNEW:SPAC9 
KW   5-methyltetrahydropteroyltriglutamate--homocystein
methyltransferase;
KW   amino acid permease; arylalkylamine n-acetyltransferase;
atp-dependent;
KW   atp12 protein precursor homolog; conserved hypothetical protein;
KW   glucose-6-phosphate 1-dehydrogenase; GTP-binding protein;
KW   retrotransposable element tf2; rna helicase; steroid reductase;
KW   U5 snRNP-specific 200kd protein; zwf1.


   EMBLNEW:SPAP8A3
KW   60s ribosomal protein l22; cdc4+; DAHP synthetase family; ef-hand
protein;
KW   GTP binding protein; GTP/OBG family; heat shock protein; hsp9;
KW   paa1+ protein phosphotase 2a 65kd regulatory sububit;
KW   phospho-2-dehydro-3-deoxyheptonate aldolase; protein transport
protein;
KW   RBD; RNA recognition motif; RNP; rpl22; RRM; sec7 domain;
KW   splicing factor u2af 35 kd subunit; subtilase family;
KW   tripeptidylpeptidase ii; zinc finger.
 

   EMBLNEW:SPCC4F11
KW   GLFG family; nucleoporin; protein phosphatase 2c homolog 1; ptc1;
Sur1;
KW   transcriptional regulator; zinc finger.




          **********           CONTACTS             *******

          *************************************************


Please address
Sequencing enquiries to Marie-Adele Rajandream mar at sanger.ac.uk (Project
Manager)
Clone requests to Rhian Gwilliam rg1 at sanger.ac.uk (DNA co-ordinator)
Analysis and gene prediction queries to Mike Lyne mhl at sanger.ac.uk
                                     or Valerie Wood val at sanger.ac.uk
Pombase enquries to Valerie Wood val at sanger.ac.uk



-- 
----------------------------------------------------------------------------------
Valerie Wood		       Tel: 01223 494954
S. Pombe Genome Project	       Fax: 01223 494919 		       
The Sanger Centre              email: val at sanger.ac.uk
Wellcome Trust Genome Campus   http://www.sanger.ac.uk/Projects/S_pombe 
Cambridge                      S. pombe Functional Classificatiom
CB10 1SA                       http://www.sanger.ac.uk/Users/val/





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