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New Saccharomyces Sequences 10/30/97

SGD Sequences yeast-seq at genome.Stanford.EDU
Thu Oct 30 06:53:53 EST 1997


====================== New DNA Sequences =======================

SCSCC1      Y14280     6350bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae scc1 gene.
    Scc1 gene; sister chromatid cohesion; Scc1; sister chromatid cohesion
     protein 1.

SCSCC2      Y14279    10092bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae scc2 gene.
    Scc2 gene; sister chromatid cohesion; Scc2; sister chromatid cohesion
     protein 2.

SCSMC3      Y14278     5074bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae smc3 gene.
    Smc3 gene; Smc3.

SCU31217    U31217     3234bp    DNA      PLN      28-OCT-1997
    Saccharomyces cerevisiae Cdp1p (CDP1) gene, complete cds.
    CDP1; Cdp1p.

==================== Updated DNA Sequences =====================

YSCRPR1A    M27035 M63181     1337bp    DNA      PLN      28-OCT-1997
    Saccharomyces cerevisiae RNase P RNA (RPR1) gene.
    RPR1; RNase P RNA.

=========== Updated Sequence Features/Annotations  =============

AF020682    AF020682     1635bp    DNA      PLN      28-OCT-1997
    Saccharomyces cerevisiae U1 snRNP protein (PRP42) gene, complete cds.
    PRP42; U1 snRNP protein.

SCU12980    U12980 U00091   103687bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae chromosome I left arm.
    two alcohol/sorbitol; S.cerevisiae Ycr28p homolog; FLO9; GDH3; SEQ1;
     Seq1p: putative membrane protein; YAL066W; Yal066wp; YAL065C; Yal065cp;
     YAL064W-B; Yal064w-bp; Flo9p: Putative cell wall protein involved in
     flocculation; YAL063C; Yal063cp; Gdh3p: NADP-glutamate dehydrogenase
     homolog; YAL061W; Yal061wp; YAL060W; Yal060wp; ECM1; Ecm1p; CNE1; Cne1p:
     calnexin homolog; YAL058C-A; Yal058c-ap; YAL056W; Yal056wp; YAL055W;
     Yal055wp; ACS1; Acs1p: acetyl CoA synthetase; YAL053W; Yal053wp;
     YAL051W; Yal051wp: CYP1-like transcription factor with zinc finger
     motif; YAL049C; Yal049cp; YAL048C; Yal048cp; SPI6; Spi6p; YAL046C;
     Yal046cp; YAL045C; Yal045cp; GCV3; Gcv3p: H-protein subunit of the
     glycine cleavage system; PTA1; Pta1p: Pre-tRNA processing involved
     protein; YAL043C-A; Yal043c-ap; YAL042W; Yal042wp; CDC24; Cdc24p:
     putative calcium binding protein; CLN3; Cln3p: G(sub)1 cyclin; CYC3;
     Cyc3p: cytochrome C heme lyase; CDC19; Cdc19p: pyruvate kinase; YAL037W;
     Yal037wp; YAL036C; Yal036cp; FUN12; Fun12p: 97kDa protein, function
     unknown; YAL035C-A; Yal035c-ap; YAL034W-A; Yal034w-ap; FUN19; Fun19p;
     FUN53; Fun53p; FUN20; Fun20p; FUN21; Fun21p; SNC1; Snc1p:
     Vesicle-associated membrane protein,synaptobrevin homolog; MYO4; Myo4p:
     myosin-like protein; YAL028W; Yal028wp; YAL027W; Yal027wp; DRS2; Drs2p:
     Membrane spanning Ca-ATPase(P-type), member of the cation
     transport(E1-E2) ATPase; MAK16; Mak16p: putative nuclear protein; LTE1;
     Lte1p: GDP/GTP exchange factor required for growth at low temperatures.

SCYGRGENS   Y07777    11628bp    DNA      PLN      27-OCT-1997
    S.cerevisiae YGR gene cluster.
    YKS5; MES1 gene; methionyl-tRNA synthetase; RAD2 gene; RAD2 protein;
     RAD2; YKS5; MES1; methionine--tRNA ligase.

YSCCHROMI   L22015 U00091    41988bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae chromosome I sequence.
    DNA replication protein; RNA polymerase III; EFB1 gene; U18 snRNA; TFC3
     gene; GP25L homolog; TGA1 gene; adenine synthesis protein; cell cycle
     regulation protein; centromere; elongation factor; heat shock protein;
     protein kinase; sporulation protein; transfer RNA; ty1 transposon;
     MDM10; Mdm10p: Mitochondrial outer membrane protein; SPO7; Spo7p; FUN14;
     Fun14p; YAL007C; Yal007cp; tP(UGG)A; tRNA-Pro; SSA1; Ssa1p: Heat shock
     protein of HSP70 family; YAL004W; Yal004wp; EFB1; Efb1p: elongation
     factor; VPS8; Vps8p; TFC3; Tfc3p: Transcription factor tau (TFIIIC)
     subunit 138; YAR002W; Yar002wp; YAR002C-A; Yar002c-ap; YAR003W;
     Yar003wp; RFA1; Rfa1p: Subunit of replication factor RF-A; SEN34;
     Sen34p: tRNA splicing endonucleaese 34kDa subunit; YAR009C; Yar009cp;
     YAR010C; Yar010cp; tA(UGC)A; tRNA-Ala; YAR014C; Yar014cp; ADE1; Ade1p:
     phosphoribosyl amino imidazolesuccinocarbozamide synthetase; KIN3;
     CDC15; Cdc15p: Putative kinase.

YSCLTESPO   L05146 L04459 L05027 M36073 M98389 S93805 U00091    29410bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae chromosome I sequence.
    CCR4; CYS3; NTG1; DEP1; TPD3; carbon catabolite repressor; cystathionine
     gamma-lyase; protein phosphatase 2A regulatory subunit A;
     serine/threonine kinase; PMT2; Pmt2p: protein O-D-mannosyltransferase;
     FUN26; Fun26p; Ccr4p: Carbon catabolite repressor protein; ATS1; Ats1p;
     FUN30; Fun30p; YAL018C; Yal018cp; FUN31; Fun31p: Putative
     serine/threonine kinase; Tpd3p: protein phosphatase 2A regulatory
     subunit A; Ntg1p: endonuclease III-like glycosylase 1; YAL014C;
     Yal014cp; Dep1p: Regulator of phospholipid metabolism; Cys3p:
     cystathionine gamma-lyase; YAL011W; Yal011wp; MDM10; Mdm10p:
     Mitochondria outer membrane protein.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/






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