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New Saccharomyces Sequences 11/04/97

SGD Sequences yeast-seq at genome.Stanford.EDU
Tue Nov 4 13:41:00 EST 1997


====================== New DNA Sequences =======================

AF004911    AF004911     7224bp    DNA      PLN      01-NOV-1997
    Saccharomyces cerevisiae translation initiation factor eIF3, p135 subunit
     (TIF31) gene, complete cds.
    TIF31; translation initiation factor eIF3, p135 subunit.

AF004912    AF004912     4565bp    DNA      PLN      01-NOV-1997
    Saccharomyces cerevisiae Sec18p (SEC18) gene, partial cds, and
     translation initiation factor 3 p110 subunit (TIF32) gene, complete cds.
    SEC18; Sec18p; TIF32; translation initiation factor 3 p110 subunit.

AF004913    AF004913     2106bp    DNA      PLN      01-NOV-1997
    Saccharomyces cerevisiae translation initiation factor 3 p33 subunit
     (TIF35) gene, complete cds.
    TIF35; translation initiation factor 3 p33 subunit.

AF026948    AF026948     1647bp    DNA      PLN      04-NOV-1997
    Saccharomyces cerevisiae 15S ribosomal RNA gene, mitochondrial gene for
     mitochondrial RNA, complete sequence.
    15S ribosomal RNA.

SCHIS6GEN   X87341     1521bp    DNA      PLN      01-NOV-1997
    S.cerevisiae gene for
     phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxamide
     isomerase.
    his6 gene; phosphoribosyl imidazolecarboxamide isomerase; his6;
     N-(5'-phospho-D-ribosylformimino)-5-
     amino-1-(5''-phosphoribosyl)-4-imidazole carboxamide;
     N-(5'-phospho-D-ribosylformimino)-5-
     amino-1-(5''-phosphoribosyl)-4-imidazole carboxamide isomerase.

==================== Updated DNA Sequences =====================

SCU14002    U14002     2675bp    DNA      PLN      30-OCT-1997
    Saccharomyces cerevisiae DC5 strain DDI1 gene, complete cds.
    DDI1.

=========== Updated Sequence Features/Annotations  =============

AF020682    AF020682     1635bp    DNA      PLN      28-OCT-1997
    Saccharomyces cerevisiae U1 snRNP protein (PRP42) gene, complete cds.
    PRP42; U1 snRNP protein.

SCERG19     X97557     1920bp    DNA      PLN      29-OCT-1997
    S.cerevisiae ERG19 gene.
    diphosphomevalonate decarboxylase; ERG19 gene; ERG19.

SCSCC1      Y14280     6350bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae scc1 gene.
    Scc1 gene; sister chromatid cohesion; Scc1; sister chromatid cohesion
     protein 1.

SCSCC2      Y14279    10092bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae scc2 gene.
    Scc2 gene; sister chromatid cohesion; Scc2; sister chromatid cohesion
     protein 2.

SCSMC3      Y14278     5074bp    DNA      PLN      27-OCT-1997
    Saccharomyces cerevisiae smc3 gene.
    Smc3 gene; Smc3.

SCU31217    U31217     3234bp    DNA      PLN      28-OCT-1997
    Saccharomyces cerevisiae Cdp1p (CDP1) gene, complete cds.
    CDP1; Cdp1p.

YSCL8084    U19729 Y13138    40197bp    DNA      PLN      25-OCT-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8084.
    YLR387C; Ylr387cp; YLR388W; Ylr388wp; SNR34; STE23; Ste23p; ECM19;
     Ecm19p; YLR391W-A; Ylr391w-ap; YLR392C; Ylr392cp; ATP10; Atp10p:
     essential for the assembly of the mitochondrial ATPase complex; YLR394W;
     Ylr394wp; COX8; Cox8p: cytochrome c oxidase polypeptide VIII; VPS33;
     Vps33p; AFG2; Afg2p; SKI2; Ski2p: Antiviral protein; BDF1; Bdf1p;
     YLR400W; Ylr400wp; YLR401C; Ylr401cp; YLR402W; Ylr402wp; SFP1; Sfp1p;
     YLR404W; Ylr404wp; YLR405W; Ylr405wp; YLR406C; Ylr406cp: member of L31E
     ribosomal protein family; YLR407W; Ylr407wp; YLR408C; Ylr408cp; YLR409C;
     Ylr409cp.

YSCL9233    U53877 Y13138    23223bp    DNA      PLN      25-OCT-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9233.
    YDH1; Ydh1: 105 kDa protein associated with polyadenylation factor 1 (PF
     I); YLR116W; Ylr116wp; YLR117C; Ylr117cp; YLR118C; Ylr118cp; SRN2;
     Srn2p; YAP3; Yap3p: aspartic proteinase; YLR121C; Ylr121cp; YLR122C;
     Ylr122cp; YLR123C; Ylr123cp; YLR124W; Ylr124wp; YLR125W; Ylr125wp;
     YLR126C; Ylr126cp; RSI1; Rsi1p: Anaphase Promoting Complex (APC)
     component; YLR128W; Ylr128wp; DIP2; Dip2p.

YSCL9606    U53881 Y13138    29154bp    DNA      PLN      25-OCT-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9606.
    DIP2; Dip2; YLR130C; Ylr130cp; ACE2; Ace2p: Transcriptional activator of
     CUP1; YLR132C; Ylr132cp; CKI1; Cki1p: choline kinase; PDC5; Pdc5p:
     pyruvate decarboxylase isozyme 2; YLR135W; Ylr135wp; TIS11; Tis11p;
     YLR137W; Ylr137wp; YRL138W; Yrl138wp; SLS1; Sls1p; YLR140W; Ylr140wp;
     RRN5; Rrn5p; PUT1; Put1p: proline oxidase; tD(GUC)L1; tRNA-Asp; YLR143W;
     Ylr143wp.

YSCL9634    U53879 Y13138    39322bp    DNA      PLN      25-OCT-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9634.
    YLR144C; Ylr144cp; YLR145W; Ylr145wp; YLR146C; Ylr146cp: spermidine
     synthase; SMD3; Smd3p: Small nuclear ribonucleoprotein D3 homolog; PEP3;
     Pep3p: Vacuolar membrane protein; YLR149C; Ylr149cp; STM1; Stm1p: G4
     quadruplex nucleic acid binding protein; YLR151C; Ylr151cp; YLR152C;
     Ylr152cp; ACS2; Acs2p: acetyl-coenzyme A synthetase; YLR154C; Ylr154cp;
     tQ(UUG)L; tRNA-Gln; RDN37; 35S ribosomal RNA; RDN25; 25S ribosomal RNA;
     RDN58; 5.8S ribosomal RNA; RDN18; 18S ribosome RNA; 5S ribosomal RNA;
     18S ribosomal RNA.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/





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