IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

New Saccharomyces Sequences 01/18/97

SGD Sequences yeast-seq at GENOME.STANFORD.EDU
Sat Jan 18 07:04:30 EST 1997

=========== New Sequences =============

SCEXO70     Y08787     1872bp    DNA      PLN      15-JAN-1997
    S.cerevisiae EXO70 gene.
    multiprotein70 kD Exocyst complex protein; EXO70 gene; exocytosis; EXO70.

SCFLP5      Y10429      248bp    DNA      PLN      13-JAN-1997
    Artificial plasmid DNA containing 5' sequence of yeast FLP gene.
    FLP gene; FLP.

SCSEC10     Y08789     2616bp    DNA      PLN      15-JAN-1997
    S.cerevisiae SEC10 gene.
    100 kD Exocyst complex protein; exocytosis; multiprotein complex; SEC10
     gene; SEC10; 100 kD exocyst complex component.

SCSEC5      Y08788     2916bp    DNA      PLN      15-JAN-1997
    S.cerevisiae SEC5 gene.
    107 kD Exocyst complex protein; exocytosis; multiprotein complex; SEC5
     gene; SEC5.

SCU05336    U05336     2699bp    DNA      PLN      18-JAN-1997
    Saccharomyces cerevisiae sec sixty-one protein homolog (Ssh1) gene,
     complete cds.
    Ssh1; sec sixty-one protein homolog.

SCU10280    U10280     3066bp    DNA      PLN      17-JAN-1997
    Saccharomyces cerevisiae Ume1p (UME1) and Mkk2p (MKK2) genes, complete
    UME1; Ume1p; MKK2; Mkk2p.

SCU79459    U79459      897bp    DNA      PLN      16-JAN-1997
    Saccharomyces cerevisiae dicarboxylate transport protein gene, nuclear
     gene encoding mitochondrial protein, complete cds.
    dicarboxylate transport protein.

=========== Updated Features/Annotations  =============

D87274      D87274     3104bp    DNA      PLN      17-JAN-1997
    Yeast DNA for PTK2p, complete cds.
    PTK2p; PTK2.

SC8248      Z46373    25135bp    DNA      PLN      15-JAN-1997
    S.cerevisiae chromosome XIII cosmid 8248.
    3-hydroxy-3methylglutaryl-coenzyme A reductase; CPR3; cyclophilin; CYP3;
     FKBP; HMG1; peptidylprolyl cis-trans isomerase; ribosomal protein;
     YL16A; CPR3 or CYP3; YL16a.

SCACB1      Y08687     2656bp    DNA      PLN      13-JAN-1997
    S.cerevisiae genes ACB1 and ORM1.
    ACB1 gene; ORM1 gene; ORM1; ACB1.

SCCHRIVFY   X96876    26756bp    DNA      PLN      14-JAN-1997
    S.cerevisiae DNA of cosmid from chromosome IV, strain FY 1679.
    rho GDP dissociation; ARF2 gene; BPL1 gene; PPH21 gene; RGT2 gene; BPL1;
     biotin apo-protein ligase; D2145; RPB1; D2155; RGT2; ARF2; ribosomal L35
     protein; rho GDP dissociation factor; PPH21; ribosomal protein L41B;
     D2185; D2190; D2195.

SCCYCL      X17505      722bp    RNA      PLN      15-JAN-1997
    Yeast mRNA for cyclophilin.
    cyclophilin; peptidylprolyl cis-trans isomerase.

SCDNASIMP   X90459     1865bp    DNA      PLN      13-JAN-1997
    S.cerevisiae DNA for SOM1 gene.
    SOM1 gene; suppressor of imp1; SOM1; suppressor of imp1 mutant.

SCGLO1      X99240     2500bp    DNA      PLN      16-JAN-1997
    S.cerevisiae GLO1 gene.
    GLO1 gene; glyoxalase I; GLO1.

SCHRVIILT   X94357    39411bp    DNA      PLN      14-JAN-1997
    S.cerevisiae left telomeric region from chromosome VII.
    ADH4 gene; FZF1 gene; HXK2 gene; PDE1 gene; RTG2 gene; ADH4; FZF1
     alternate name SUL1; HXK2 alternate name HEX1;SCI2;HKB; RTG2; HFM1;

SCOST5GEN   X97545      652bp    DNA      PLN      15-JAN-1997
    S.cerevisiae OST5 gene.
    9.5 kD subunit; N-oligosaccharyltransferase; OST5 gene; OST5; 9.5 kD
     subunit of N-oligosaccharyltransferase.

SCU16015    U16015     5100bp    DNA      PLN      17-JAN-1997
    Saccharomyces cerevisiae ribosomal protein YL19 (RPL19B) gene, complete
    RPL19B; ribosomal protein YL19.

SCU50630    U50630     3259bp    DNA      PLN      16-JAN-1997
    Saccharomyces cerevisiae Vps28p (VPS28) gene, complete cds.
    VPS28; Vps28p.

SCU62525    U62525     2388bp    DNA      PLN      18-JAN-1997
    Saccharomyces cerevisiae Sds3p (SDS3) gene, complete cds.
    SDS3; Sds3p.

SCYPT31     X72833     1265bp    DNA      PLN      14-JAN-1997
    S.cerevisiae YPT3A gene.
    YPT31 gene; YPT31; Ypt31p.

SCYPT32     X72834     1193bp    DNA      PLN      14-JAN-1997
    S.cerevisiae YPT3B gene.
    YPT32 gene; YPT32; Ypt32p.

Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/

More information about the Yeast mailing list

Send comments to us at biosci-help [At] net.bio.net