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New Saccharomyces Sequences 08/23/97

SGD Sequences yeast-seq at GENOME.STANFORD.EDU
Sat Aug 23 06:20:09 EST 1997

=========== Updated Sequence Features/Annotations  =============

SCMRS11     Z80875     1088bp    DNA      PLN      18-AUG-1997
    S.cerevisiae MRS11 gene.
    MRS11 gene; Mrs11p; transfer RNA-Thr; tRNA-Thr gene; tRNA-Thr; MRS11.

SCTFS1G     X62105     1394bp    DNA      PLN      20-AUG-1997
    S.cerevisiae TFS1 gene.
    suppressor; TFS1 gene; TFS1.

SCURA4      X07561     1955bp    DNA      PLN      20-AUG-1997
    Saccharomyces cerevisiae URA4 gene for dihydroorotase (EC
    dihydroorotase; URA4 gene.

YSCH8167    U14913 Y13138    38868bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8167.
    YLR191W; Pas20p: component of peroxisomal protein import machinery;
     YLR192C; Ylr192cp; YLR193C; Ylr193cp; YLR194C; Ylr194cp; NMT1; Nmt1p:
     N-Myristoyltransferase; PWP1; Pwp1p; SIK1; Sik1p; YLR198C; Ylr198cp;
     YLR199C; Ylr199cp; YKE2; Yke2p: polypeptide 6 of a yeast non-native
     actin binding complex; YLR201C; Ylr201cp; YLR202C; Ylr202cp; MSS51;
     Mss51p: Probable initiation factor specific for translation of COX1 and
     COB mRNA; QRI5; Qri5p; YLR205C; Ylr205cp; YLR206W; Ylr206wp; YLR207W;
     Ylr207wp; SEC13; Sec13p; YLR209C; Ylr209c: purine-nucleoside
     phosphorylase; CLB4; Clb4p: G2-specific B-type cyclin; YLR211C;
     Ylr211cp; TUB4; Tub4p: gamma tubulin-like protein; YLR213C; Ylr213cp;
     FRE1; Fre1p: Ferric (and cupric) reductase; YLR215C; Ylr215cp; CPR6;
     Cpr6p: cyclophilin related to the mammalian CyP-40; YLR217C; Ylr217wp;
     YLR218C; Ylr218cp; YLR219W; Ylr219wp; CCC1; Ccc1p: putative
     transmembrane Ca2+ transporter.

YSCL8003    U17243 Y13138    40214bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8003.
    YLR278C; Ylr278cp; YLR279W; Ylr279wp; YLR280C; Ylr280cp; YLR281C;
     Ylr281cp; YLR282C; Ylr282cp; YLR283W; Ylr283wp; YLR284C; Ylr284cp;
     YLR285W; Ylr285wp; CTS1; Cts1p: Endochitinase; YLR287C; Ylr287cp;
     RPS30A; Rps30ap: homolog of mammalian ribosomal protein S30; MEC3;
     Mec3p; GUF1; Guf1p; YLR290C; Ylr290cp; GCD7; Gcd7p: subunit of the
     guanine nucleotide exchange factor for EIF-2; SEC72; Sec72p; GSP1;
     Gsp1p: GTP-binding nuclear protein; YLR294C; Ylr294cp; ATP14; Atp14p:
     ATP synthase subunit h; YLR296W; Ylr296wp; YLR297W; Ylr297wp; YLR298C;
     Ylr298cp; ECM38; Ecm38p: gamma-glutamyltransferase homolog; EXG1; Exg1p:
     Exo-1,3-Beta-Glucanase; YLR301W; Ylr301wp; tL(UAG)L2; tRNA-Leu; YLR302C;
     Ylr302cp; MET17; Met17p: O-acetylhomoserine-O-Acetylserine
     sulfhydrylase; tI(AAU)L1; tRNA-Ile; ACO1; Aco1p: Aconitate hydratase;
     STT4; Stt4p: phosphatidylinositol-4-kinase.

YSCL8004    U53876 Y13138    40340bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8004.
    SUL2; Sul2p: high affinity sulfate permease; YLR093C; Ylr093cp; YLR094C;
     Ylr094cp; YLR095C; Ylr095cp; KIN2; Kin2p: Serine/Threonine protein
     kinase; YLR097C; Ylr097cp; CHA4; Cha4p: DNA binding activator; YLR099C;
     Ylr099cp; YLR100W; Ylr100wp; YLR101C; Ylr101cp; YLR102C; Ylr102cp;
     CDC45; Cdc45p: assembles into a complex with Cdc46p/Mcm5p; YLR104W;
     Ylr104wp; SEN2; Sen2p: tRNA-splicing endonuclease beta-subunit; YLR106C;
     Ylr106cp; YLR107W; Ylr107wp.

YSCL8039    U19103 Y13138    31806bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8039.
    ADE13; Ade13p: adenylsuccinate lyase; VPS38; Vps38p; YLR361C; Ylr361cp;
     STE11; Ste11p: Ser/Thr protein kinase; NMD4; Nmd4p; YLR364W; Ylr364wp;
     YLR365W; Ylr365wp; YLR366W; Ylr366wp; RPS24B; Rps24bp: 40S ribosomal
     protein S22; SNR44; YLR368W; Ylr368wp; YLR369W; Ylr369wp; YLR370C;
     Ylr370cp; YLR371W; Ylr371wp; SUR4; Sur4p: sterol isomerase; YLR373C;
     Ylr373cp; YLR374C; Ylr374cp; STP3; Stp3p; YLR376C; Ylr376cp; FBP1;
     Fbp1p: fructose-1,6-bisphophatase; tK(UUU)L; tRNA-Lys; SEC61; Sec61p.

YSCL8083    U19027 Y13138    41454bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8083.
    YLR219W; Ylr219wp; CCC1; CCC1p: putative transmembrane Ca2+ transporter;
     YLR221C; Ylr221cp; YLR222C; Ylr222cp; IFH1; Ifh1p; YLR224W; Ylr224wp;
     YLR225C; Ylr225cp; YLR226W; Ylr226wp; YLR227C; Ylr227cp; tL(UAG)L1;
     tRNA-Leu; YLR228C; Ylr228cp; CDC42; Cdc42p: member of the Rho subfamily
     of Ras-like proteins; tI(UAU)L; tRNA-Ile; YLR231C; YLR232W; Ylr232wp;
     EST1; Est1p: Telomere elongation protein; TOP3; Top3p: DNA Topoisomerase
     III; THI7; Thi7p: thiamine transporter; YLR238W; Ylr238wp; YLR239C;
     Ylr239cp; VPS34; Vps34p.

YSCL8300    U19028 Y13138    37541bp    DNA      PLN      21-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8300.
    tD(GUC)L2; tRNA-Asp; RPS31; Rps31p; YLR334C; Ylr334cp; tE(UUC)L;
     tRNA-Glu; NUP2; Nup2p; SGD1; Sgd1p; VRP1; Vrp1p; YLR338W; Ylr338wp;
     YLR339C; Ylr339cp; RPL10E; Rpl10ep; YLR341W; Ylr341wp; FKS1; Fks1p;
     YLR343W; Ylr343wp; tR(CCG)L; tRNA-Arg; YLR344W; Ylr344wp; YLR345W;
     Ylr345wp; YLR346C; Ylr346cp; KAP95; Kap95p; YLR348C; Ylr348cp; YLR349W;
     Ylr349wp; YLR350W; Ylr350wp.

YSCL8479    U17244 Y13138    32494bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 8479.
    tA(AGC)L; tRNA-Ala; YLR257W; Ylr257wp; GSY2; Gsy2p: Glycogen Synthase
     (UDP-glucose--starch glucosyltransferase); HSP60; Hsp60p: Heat shock
     protein 60; YLR260W; Ylr260wp; YPT6; Ypt6p: Ras-like GTP binding
     protein; YLR262C; Ylr262cp; RED1; Red1p; RPS33B; Rps33bp: 40S ribosomal
     protein YL27; YLR265C; Ylr265cp; YLR266C; Ylr266cp; YLR267W; Ylr267wp;
     SEC22; Sec22p: synaptobrevin (v-SNARE) homolog; YLR269C; Ylr269cp;
     YLR270W; Ylr270wp; YLR271W; Ylr271wp; YLR272C; Ylr272cp.

YSCL9324    U22382 Y13138    21732bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9324.
    ECM7; Ecm7; YLR444C; Ylr444cp; YLR445W; Ylr445wp; YLR446W; Ylr446wp;
     VMA6; Vma6p: 36 kDa subunit of the vacuolar H(+) ATPase; RPL16B;
     Rpl16bp: 60S ribosomal protein YL16B; YLR449W; Ylr449wp; HGM2; Hmg2p:
     3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase; LEU3; Leu3p:
     positive regulator of LEU genes; SST2; Sst2p; RIF2; Rif2p.

YSCL9328    U17245 Y13138    14827bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9328.
    YLR272C; Ylr272cp; tV(AAC)L; tRNA-Val; PIG1; Pig1p: putative type 1
     protein phosphatase targeting subunit; CDC46; Cdc46p; YLR275W; Ylr275wp;
     YLR276C; Ylr276cp; YSH1; Ysh1p: subunit of polyadenylation factor I (PF
     I); YLR278C; Ylr278cp.

YSCL9354    U53878 Y13138    15693bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9354.
    YLR107W; Ylr107wp; SNR6; YLR108C; Ylr108cp; YLR109W; Ylr109wp; YLR110C;
     Ylr110cp; YLR111W; Ylr111wp; YLR112W; Ylr112wp; HOG1; Hog1p:
     Mitogen-activated and osmosensing protein kinase; tRNA-Arg; YLR114C;
     Ylr114cp; YDH1; Ydh1p: 105 kDa protein associated with polyadenylation
     factor 1 (PF I).

YSCL9362    U51921 Y13138    29427bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9362.
    RDN5; 5S ribosomal RNA; ASP3; Asp3p: L-Asparaginase II; YLR156W;
     Ylr156wp; 5S ribosome RNA; YLR159W; Ylr159wp; YLR161W; Ylr161wp;
     YLR162W; Ylr162wp; MAS1; Mas1p: Mitochondrial processing protease
     subunit; YLR164W; Ylr164wp; YLR165C; Ylr165cp; SEC10; Sec10p: 100 kDa
     component of the Exocyst complex.

YSCL9449    U53880 Y13138    42022bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9449.
    YLR077W; Ylr077wp; BOS1; Bos1p; SIC1; Sic1p: P40 inhibitor of
     Cdc28p-Clb5p protein kinase complex; YLR080W; Ylr080wp; GAL2; Gal2p:
     Galactose permease; SMC4; Smc4p; EMP70; Emp70p: P24A protein; YLR084C;
     Ylr084cp; ARP6; Arp6p: actin-related protein; YLR086W; Ylr086wp;
     YLR087C; Ylr087cp; GAA1; Gaa1p; YLR089C; Ylr089cp: alanine
     aminotransferase; XDJ1; Xdj1p: Homolog of E. coli DnaJp; YLR091W;
     Ylr091wp; SUL2; Sul2p: high affinity sulfate permease.

YSCL9470    U17246 Y13138    40738bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9470.
    SEC10; Sec10p: 100 kDa component of the Exocyst complex; UBI3; Ubi3p:
     Ubiquitin fused to ribosomal protein S27A; MSF1'; Msf1p'; YLR169W;
     Ylr169wp; APS1; Aps1p: clathrin coat assembly protein complex, small
     subunit; YLR171W; Ylr171wp; DPH5; Dph5p: diphthine synthase; YLR173W;
     Ylr173wp; IDP2; Idp2p: isocitrate dehydrogenase; CBF5; Cbf5p:
     centromere/microtubule binding protein; YLR176C; Ylr176cp; YLR177W;
     Ylr177wp; TFS1; Tfs1p: CDC25-dependent, ammonia-responsive cell-cycle
     regulator; YLR179C; Ylr179cp; SAM1; Sam1p: S-adenosylmethionine
     synthetase; YLR181C; Ylr181cp; SWI6; Swi6p: Transcriptional regulatory
     protein; YLR183C; Ylr183cp; YLR184W; Ylr184wp; RPL35A; Rpl35ap: 60S
     ribosomal protein L37; YLR186W; Ylr186wp; YLR187W; Ylr187wp; MDL1;
     Mdl1p; YLR189C; Ylr189cp; YLR190W; Ylr190wp; PEX13; Pex13p.

YSCL9576    U20939 Y13138    35805bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9576.
    URA4; Ura4p: dihydrooratase; YLR421C; Ylr421cp; YLR422W; Ylr422wp;
     YLR423W; Ylr423cp; YLR424W; Ylr424wp; tN(GUU)L; tRNA-Asn; YLR425W;
     Ylr425wp; YLR426W; Ylr426wp; YLR427W; Ylr427wp; YLR428C; Ylr428cp;
     YLR429W; Ylr429wp; SEN1; Sen1p.

YSCL9672    U20865 Y13138    40455bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9672.
    VPS34; Vps34p: phosphatidylinositol 2-kinase; YLR241W; Ylr241wp; ARV1;
     Arv1p; YLR243W; Ylr243wp; MAP1; Map1p: methionine aminopeptidase;
     YLR245C; Ylr245cp: cytidine deaminase; YLR246W; Ylr246wp; tL(CAA)L;
     tRNA-Leu; YLR247C; Ylr247cp; RCK2; Rck2p: Serine/Threonine protein
     kinase; YEF3; Yef3p: Elongation factor 3 (EF-3); SSP120; SSp120p:
     Secretory protein; YLR251W; Ylr251wp; YLR252W; Ylr252wp; YLR253W;
     Ylr253wp; YLR254C; Ylr254cp; HAP1; Hap1p: zinc-finger transscription
     factor of the Zn(2)-Cys(6) binuclear cluster domain type; tA(AGC)L;

YSCL9753    U21094 Y13138    24761bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9753.
    SEN1; Sen1p; YLR431C; Ylr431cp; YLR432W; Ylr432wp:
     Inosine-5'-monophosphate dehydrogenase; CNA1; Cna1p: Protein phosphatase
     2B catalytic subunit A1 (Calcineurin A1); YLR434C; Ylr434cp; YLR435W;
     Ylr435wp; ECM30; Ecm30p; YLR437C; Ylr437cp; CAR2; Car2p: Ornithine
     aminotransferase; MRPL4; Mrpl4p: Mitochondrial 60S ribosomal protein L4;
     YLR440C; Ylr440cp; RP10A; Rp10ap: 40S ribosomal protein 10A; SIR3;
     Sir3p: Silent mating-type information regulator.

YSCL9931    U20162 Y13138    28149bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid 9931.
    YLR410W; Ylr410wp; CTR3; Ctr3p; YLR412W; Ylr412wp; YLR413W; Ylr413wp;
     YLR414C; Ylr414cp; YLR415C; Ylr415cp; YLR416C; Ylr416cp; VPS36; Vps36p;
     CDC73; Cdc73p; YLR419W; Ylr419wp; tL(UAA)L; tRNA-Leu; URA4; Ura4p:

YSCLL2142   U17247 Y13138    19198bp    DNA      PLN      22-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid L2142.
    STT4; Stt4p: Phosphatidylinositol-4-kinase; UBC12; Ubc12p:
     ubiquitin-conjugating enzyme; YLR307W; Ylr307wp; YLR308W; Ylr308wp;
     IMH1; Imh1p; CDC25; Cdc25p: regulatory protein of adenylate cyclase.

YSCLL3502   U19104 Y13138    22761bp    DNA      PLN      21-AUG-1997
    Saccharomyces cerevisiae chromosome XII cosmid L3502.
    tK(UUU)L; tRNA-Lys; SEC61; Sec61p: membrane component of ER protein
     translocation apparatus; YLR379W; Ylr379wp; YLR380W; Ylr380wp; YLR381W;
     Ylr381wp; NAM2; Nam2p: mitochondrial leucyl-tRNA synthetase; YLR383W;
     Ylr383wp; IKI3; Iki3p; YLR385C; Ylr385cp; YLR386W; Ylr386wp; YLR387C;

Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/

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