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New Saccharomyces Sequences 10/26/96

SGD Sequences yeast-seq at GENOME.STANFORD.EDU
Sat Oct 26 12:40:50 EST 1996


=========== New Sequences =============

SC128XV     X95465    12805bp    DNA      PLN      21-OCT-1996
    S.cerevisiae 12.8 Kbp fragment of the left arm of chromosome XV.
    glycophospholipid-anchored surface6-phosphofructo-2-kinase; ORF; surface
     glycoprotein.

SCSUP44GN   X94106     6812bp    DNA      PLN      21-OCT-1996
    S.cerevisiae G2882, G2889, and SUP44 genes.
    G2882 gene; G2889 gene; SUP44 gene; G2882; G2889; SUP44.

SCU72346    U72346     2686bp    DNA      PLN      23-OCT-1996
    Saccharomyces cerevisiae protein phosphatase type 2C (PTC3), complete
     cds.
    PTC3; protein phosphatase type 2C.

SCU72498    U72498     2250bp    DNA      PLN      24-OCT-1996
    Saccharomyces cerevisiae protein phosphatase type 2C (PTC2), complete
     cds.
    PTC2; protein phosphatase type 2C.

=========== Updated Sequences =============

S42682      S42682     2135bp    DNA      PLN      10-JUL-1992
    RPI1=46-kDa negative regulator of the Ras-cyclic AMP pathway
     [Saccharomyces cerevisiae, Genomic, 2135 nt].
    RPI1.

S46162      S46162     2261bp    DNA      PLN      10-JUL-1992
    ERG3=C-5 sterol desaturase [Saccharomyces cerevisiae, Genomic, 2261 nt].
    ERG3; C-5 sterol desaturase.

=========== Updated Features/Annotations  =============

CS39KBCIV   X99000    39090bp    DNA      PLN      21-OCT-1996
    S.cerevisiae 39kb DNA segment of chromosome IV.
    gdhanti-silencing protein; ASF2 gene; GABA transporter protein; GDH;
     NAD-dependent glutamate dehydrogenase; SHR3; secretory component;
     Gly-tRNA; UGA4; NHP2; high-mobility-group-like protein; HEM3;
     hydroxymethylbilane synthase; MGT1; methylated-DNA-protein-cysteine;
     S-methyl-transferase; ; sugar transport protein; SHM1; SHM1 protein;
     ASF2.

CSGTSGGP    X85757     8864bp    DNA      PLN      21-OCT-1996
    S.cerevisiae G1651, G1654, tRNA-lys1, SUA5, PMR1, G1667, & G1669 genes.
    ATPase; PMR1 gene; RNA helicase; SUA5 gene; tRNA-Lys gene; G1651;
     putative ATP dependent RNA helicase; G1654; tRNA-lys1; G1660; G1663;
     PMR1/SCC1=G1666; calcium transporting ATPase 1; internal ORF G1667;
     internal orf G1669; ACE1.

SC354CHIV   X95966    35452bp    DNA      PLN      21-OCT-1996
    S.cerevisiae 35.4kb DNA region on left arm of chromosome IV.
    ATP; 35 kDa protein; 40S ribosomal protein; 60S ribosomal protein;
     orf:PZA520; galactokinase-like protein; orf:PZE110; SNQ2; ATP dependent
     permease; RPL2B; orf:PZA208; orf:PZB647; orf:PZF129; orf:PZF1050;
     orf:PZA114; orf:PZF396; GCV1; glycine cleavage T protein; orf:PZE232;
     orf:PZC399; orf:PZD196; orf:PZC109; tRNA-Val; transfer RNA-Val; SES1;
     seryl-tRNA synthetase; orf:PZA161; RPS18A; orf:PZE570; orf:PZF889;
     orf:PZA109; orf:PZA105; HEX2; Hex2 protein.

SC38KCXVI   Z67751    37808bp    DNA      PLN      21-OCT-1996
    S.cerevisiae DNA (chromosome XVI; 38 kb).
    HSP90; gal4 protein; H(+)-transporting ATPase; HSP82 protein; putative
     protein; GAL4; SRP68; HSP90/HSP82?; putative ankyrin like protein; SUI3;
     H+-transporting ATPase 17K chain.

SCCAR2T1    X05572      112bp    DNA      PLN      21-OCT-1996
    Yeast transposon Ty1 (L)delta repeat in mutant cargB(+)0(h)-1.
    delta terminal repeat; transposable element; Ty1 transposon.

SCCAR2T2    X05573      258bp    DNA      PLN      21-OCT-1996
    Yeast transposon Ty1 (R)delta repeat in mutant cargB(+)0(h)-1.
    Ty1; delta terminal repeat; regulatory region; transposable element.

SCCAR2T4    X05575      257bp    DNA      PLN      21-OCT-1996
    Yeast transposon Ty1 (R)delta repeat in mutant cargB (+)0(h)-2.
    Ty1; delta terminal repeat; regulatory region; transposable element.

SCCNB1G     Z26521     2452bp    DNA      PLN      22-OCT-1996
    S.cerevisiae DPH2 and CNB1 genes for diphtamide biosynthesis protein
     (partial) and calcineurin B.
    calcineurin B; CNB1 gene; diphtamide biosynthesis; DPH2 gene; DPH2;
     Diphtamide biosynthesis; CNB1; calcineurin B, regulatory subunit.

SCCXIV39K   Z69381    38855bp    DNA      PLN      21-OCT-1996
    S.cerevisiae 38,855 bp segment of chromosome XIV.
    BLH1; DnaJ; globin; Kex2; N1102; N1106; N1110; N1114; N1118; N1122;
     N1129; N1135; N1139; N1142; N1146; N1154; N1158; N1161; N1165; N1249;
     N1254; N1259; N1264; N1269; N1274; SIN4; SLA2; URE2; zinc-finger; ZWF1;
     Glucose-6-phosphate dehydrogenase; Kexin; N1129.

SCCXV106K   X95258    10624bp    DNA      PLN      21-OCT-1996
    S.cerevisiae 10.6kbp fragment from chromosome XV.
    RNA binding; ribosomal protein L18; ribosomal protein S19.e; HPR1; RNA
     binding protein; SMF1; unknown protein.

SCHXT15     X92891     4144bp    DNA      PLN      21-OCT-1996
    S.cerevisiae HXT15 gene.
    hexose permease; hxt15 gene; hxt15.

SCNUP100    Z15035 S47547     4923bp    DNA      PLN      21-OCT-1996
    S.cerevisiae gene for nuclear pore complex protein NUP100 and tRNA-His.
    nuclear pore complex protein; transfer RNA; transfer RNA-His; transposon;
     nuclear pore complex protein NUP100; tRNA-His.

SCNUP116    Z15036 S47810     4896bp    DNA      PLN      21-OCT-1996
    S.cerevisiae gene for nuclear pore complex protein NUP116 and tRNA-His.
    nuclear pore complex protein; transfer RNA; transfer RNA-His; transposon;
     nuclear pore complex protein NUP116; tRNA-His.

SCPSO4      X99770     2086bp    DNA      PLN      22-OCT-1996
    S.cerevisiae PSO4 gene.
    DNA repair; PSO4 gene; sporulation; PSO4.

SCRAHS2     X07388     1415bp    DNA      PLN      21-OCT-1996
    Yeast GRF88 chromosome III RAHS DNA with Ty1-161 insertion left region
     delta 1 ( RAHS = right arm hot spot ).
    Ty1; delta element; epsilon element; transposon; Ty transposon.

SCRAHS3     X07389      793bp    DNA      PLN      21-OCT-1996
    Yeast GRF88 chromosome III RAHS DNA with Ty-161 insertion middle delta 2
     region ( RAHS = right arm hot spot).
    transposon; Ty transposon; Ty1 transposon.

SCRAHS4     X07390     1057bp    DNA      PLN      21-OCT-1996
    Yeast GRF88 chromosome III RAHS DNA with Ty1-3R insertion right delta
     (d3) region (RAHS = right arm hot spot ).
    delta element; transposon; Ty transposon; Ty1 transposon.

SCTY109     X02417     6536bp    DNA      PLN      21-OCT-1996
    Yeast Ty transposable element Ty-pY109 near tRNA-Lys1 gene.
    direct repeat; enhancer; inverted repeat; reverse transcriptase;
     transposase; transposon; ty1 transposon; unidentified reading frame.

SCTY117X    X03840 J01333 K00633 M19542 X02991    11220bp    DNA      PLN      21-OCT-1996
    Yeast transposon Ty1-17 and flanking tRNA-Glu 3/Leu 3,LEU2 genes from
     small ring of chromosome III (LEU2 coding for beta-isopropylmalate
     dehydrogenase).
    isopropylmalate; 3-isopropylmalate dehydrogenase; dehydrogenase; LEU 2;
     beta-isopropylmalate dehydrogenase.

SCTY147L    X14950 X14981      703bp    DNA      PLN      21-OCT-1996
    Yeast Ty1-476 retroelement left end located on chromosome III RAHS (right
     arm hot spot region).
    transfer; delta element; retroposon; retrotransposon; transfer RNA.

SCTY247L    X14948 X14981      431bp    DNA      PLN      21-OCT-1996
    Yeast retroelemnts Ty4-476 right end and Ty2-476 left end located on
     chromosome III RAHS (right arm hot spot).
    delta element; retroposon; retrotransposon; Ty transposon.

SCTY247R    X14949 X14981      503bp    DNA      PLN      21-OCT-1996
    Yeast Ty2-476 retroelement right end located on chromosome III RAHS
     (right arm hot spot).
    transfer; delta element; retroposon; retrotransposon; transfer RNA.

SCTY447L    X14947 X14981      679bp    DNA      PLN      21-OCT-1996
    Yeast Ty4-476 retroelement left end located in chromosome III RAHS (right
     arm hot spot region).
    delta element; retroposon; retrotransposon; Ty transposon.

SCU46215    U46215     1560bp    DNA      PLN      25-OCT-1996
    Saccharomyces cerevisiae D273-10B F1-ATPase beta-subunit (ATP2) gene,
     nuclear gene encoding a mitochondrial protein, complete cds.
    ATP2; F1-ATPase beta-subunit.

SCVCOSMGN   X89633    37672bp    DNA      PLN      21-OCT-1996
    S.cerevisiae DNA for VPH1, MOD5, CAP20, ORF1 and SNF2 genes.
    cap associated protein; CAP20 gene; dihydrofolate reductase; disulfite
     isomerase; heat shock protein; hypothetical protein; isopentenyl
     transferase; mitochondrial import protein; mod5 gene; ORF1; permease;
     phosphoglycerate mutase; regulatory protein gam1; sigma element; SNF2
     gene; transporter; tRNA-Ala; Vacuolar ATP synthase; vph1 gene;
     hypothetical permease; VPH1; vacuolar ATP synthase VPH1; hypothetical
     transporter; MOD5; tRNA isopentenyltransferase; CAP20; CAP associated
     protein; mitochondrial import protein ORF1; hypothetical dihydrofolate
     reductase; hypothetical phosphoglycerate mutase; hypothetical heat shock
     protein; hypothetical protein disulfite isomerase; transfer RNA-Ala;
     SNF2.

YSCDPB11    D42168     3488bp    DNA      PLN      24-OCT-1996
    Yeast DNA for subunit of DNA polymerase II, complete cds.
    DBP11; subunit of DNA polymerase II; similar to rad4/cut5 protein;
     DPB11(DNA polymerase II[B] subunit).


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/



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