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New Saccharomyces Sequences 07/18/96

SGD Sequences yeast-seq at GENOME.STANFORD.EDU
Thu Jul 18 09:58:16 EST 1996


CS39KBCIV   X99000    39090bp    DNA      PLN      15-JUL-1996
    S.cerevisiae 39kb DNA segment of chromosome IV.
    Gly-tRNA.

SC23KB      X99074    23002bp    DNA      PLN      11-JUL-1996
    S.cerevisiae 23Kb DNA segment from right arm of chromosome VII.
    transfer RNA-Leu3; transfer RNA-Lys1; transfer RNA-Trp; tRNA-Leu3;
     tRNA-Lys1; tRNA-Trp.

SCCHRIVFY   X96876    26756bp    DNA      PLN      01-JUL-1996
    S.cerevisiae DNA of cosmid from chromosome IV, strain FY 1679.
    ARF2 gene; BPL1 gene; PPH21 gene; RGT2 gene; rho GDP dissociation factor;
     ribosomal protein L35; rpb1 gene; BPL1; biotin apo-protein ligase;
     D2145; RPB1; D2155; RGT2; ARF2; ribosomal L35 protein; rho GDP
     dissociation factor; PPH21; ribosomal protein L41B; D2185; D2190; D2195.

SCDNASIMP   X90459     1865bp    DNA      PLN      01-JUL-1996
    S.cerevisiae DNA for SOM1 gene.
    SOM1 gene; suppressor of imp1; SOM1; suppressor of imp1 mutant.

SCE9781     U18916 L11119 L11120    68302bp    DNA      PLN      16-JUL-1996
    Saccharomyces cerevisiae chromosome V cosmids 9781, 8198, 9115, 9981, and
     lambda clones 3955 and 6052.
    PAK1 (DNA polymerase alpha; RSP5 (suppressor of mutations in SPT3); FLO8;
     Flo8p; YER109c; Yer109p; YER110c; Yer110p; SWI4; transcription factor;
     USS1; Uss1p; RPS26b; Rps26bp; BOI2; Boi2p; SPR6; Spr6p; YER116c;
     Yer116p; RPL17b; Rpl17bp; SSU81; Ssu81p; YER119c; Yer119p; SCS2; Scs2p;
     YER121w; Yer121p; GLO3; Glo3p; YCK3; Yck3p; YER124c; Yer124p; RSP5;
     Rsp5p; YER126c; Yer126p; YER127w; Yer127p; YER128w; Yer128p; PAK1; DNA
     polymerase alpha suppressing protein kinase; YER130c; Yer130p; YER131w;
     Yer131p; SNR4; YER132c; Yer132p; GLC7; protein phosphatase type 1;
     YER134c; Yer134p; YER135c; Yer135p; GDI1; secretory pathway GDP
     dissociation inhibitor; YER137c; Yer137p; SCR1.

SCGLO1      X99240     2500bp    DNA      PLN      13-JUL-1996
    S.cerevisiae GLO1 gene.
    GLO1 gene; glyoxalase I; GLO1.

SCPOP2GEN   X95844     1694bp    DNA      PLN      01-JUL-1996
    S.cerevisiae POP2 gene.
    POP2 gene; POP2.

SCU29398    U29398     1466bp    DNA      PLN      18-JUL-1996
    Saccharomyces cerevisiae Mrs15p (MRS15) gene, partial cds.
    MRS15; Mrs15p.

YSCASF2A    L07649     1993bp    DNA      PLN      17-JUL-1996
    Saccharomyces cerevisiae anti-silencing protein (ASF2) gene, complete
     cds.
    ASF2 gene; anti-silencing protein; ASF2.

YSCATP10    J05463     2286bp    DNA      PLN      17-JUL-1996
    S.cerevisiae ATP10 (essential for mitochondrial ATPase complex assembly)
     gene, complete cds.
    ATP10 protein; ATPase; F1F0-ATPase; FoF1 ATP synthase operon.

YSCCOX9     J02633      922bp    DNA      PLN      17-JUL-1996
    Yeast (S.cerevisiae) COX9 gene encoding subunit VIIa of cytochrome c
     oxidase, complete cds.
    cytochrome c oxidase; oxidase.

YSCESP1A    L07289     6298bp    DNA      PLN      17-JUL-1996
    Saccharomyces cerevisiae ESP1 gene, complete cds.
    ESP1 gene; ESP1.

YSCGDHM     M11297     1780bp    DNA      PLN      17-JUL-1996
    Yeast (S. cerevisiae) GDH1 gene encoding NADPH-dependent glutamate
     dehydrogenase.
    dehydrogenase; gdhA gene; glutamate dehydrogenase.

The Chromosome VI systematic sequence, submitted by MIPS, also can now
be found within GenBank as ORF size pieces.  Please see the following
entries:
   GenBank LOCUS names SCYDL003W to SCYDL248W (Accession Numbers Z74051
      to Z74296)
   GenBank LOCUS names SCYDR009W to SCYDR089W (Accession Numbers Z74305 
      to Z74385)
   Plus two separate ORFS in GenBank LOCUS names SCYDR262W and SCYDR545W
      (Accession Numbers Z74387 and Z74389, respectively)

The Chromosome XV systematic sequence, submitted by MIPS, also can now
be found within GenBank as ORF size pieces.  Please see the following
entries:
   GenBank LOCUS names SCYOL001W to SCYOL166C (Accession Numbers Z74743
      to Z74908)
   GenBank LOCUS names SCYOR001W to SCYOR394W (Accession Numbers Z74909
      to Z75302)

Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/



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