************************************************************************
* *
* PROGRESS REPORT FOR THE SYSTEMATIC SEQUENCING OF THE YEAST GENOME *
* *
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**************************************************************
* *
* GLOBAL STATUS ON DECEMBER 31, 94 *
* *
**************************************************************
------------------------------------------------------------------------
submitted estimated new in public
up today length Dec 94 see list
(kb) (kb) (%) (kb) (kb) (%)
------------------------------------------------------------------------
CHR I CAN BUSSEY 223 223 100% 0 233 100%
CHR II EU FELDMANN 807 807 100% 0 807 100%
CHR III EU OLIVER 314 314 100% 0 314 100%
CHR IV RIGHT 1 USA JOHNSTON 0 150 0% 0 0 0%
CHR IV RIGHT 2 USA DAVIS 0 350 0% 0 0 0%
CHR IV LEFT 1 UK BARRELL 39 540 7% 0 39 100%
CHR IV LEFT 2 EU JACQ 230 600 38% 42 33 14%
CHR V USA DAVIS 569 569 100% 121 569 100%
CHR VI JAP MURAKAMI 270* 270 100% 0 20 7%
CHR VII EU TETTELIN 619 1150 54% 64 35 6%
CHR VIII USA JOHNSTON 563 563 100% 0 563 100%
CHR IX UK BARRELL 440 440 100% 112 440 100%
CHR X EU GALIBERT 724 735 99% 27 121 17%
CHR XI EU DUJON 666 666 100% 0 666 100%
CHR XII RIGHT USA JOHNSTON 186 750 25% 40 186 100%
CHR XII LEFT EU HOHEISEL 37 450 8% 37 0 0%
CHR XIII UK BARRELL 162 910 18% 0 162 100%
CHR XIV EU PHILIPPSEN 659 810 81% 0 76 12%
CHR XV EU DUJON 396 1150 34% 20 39 10%
CHR XVI RIGHT 1 UK BARRELL 0 300 0% 0 0 0%
CHR XVI RIGHT 2 USA JOHNSTON 0 150 0% 0 0 0%
CHR XVI LEFT 1 CAN BUSSEY 10 300 3% 0 10 100%
CHR XVI LEFT 2 EU GOFFEAU 0 300 0% 0 0 0%
------------------------------------------------------------------------
TOTAL YEAST GENOME 6915 12500 55,3% 464 4305 62%
------------------------------------------------------------------------
K. Kleine P. Mordant and A. Goffeau
MIPS and University of Louvain-La-Neuve
Germany Belgium
**************************************************************
* *
* DETAILLED INFORMATIONS *
* *
**************************************************************
Coordinator : Up today Public Confidential Estimated length
(kb) % (kb) % (kb) % (kb) %
EU (Goffeau) 4451 64% 2091 47% 2360 53% 6982 56%
USA (Johnston) 749 11% 749 100% 0 0% 1613 13%
UK (Barrel) 641 9% 641 100% 0 0% 2190 17%
USA (Davis) 569 8% 569 100% 0 0% 919 7%
JAP (Murakami) 270 4% 20 7% 250 93% 270 2%
CAN (Bussey) 234 3% 234 100% 0 0% 523 4%
-----------------------------------------------------------------------
TOTAL 6915 100% 4305 2610 12500 100%
LISTA 4 : About 2 Mb of additional single genes sequences are available in
EMBL + GENBANK see e.g. LISTA 3 or 4 (linder at urz.unibas.ch) for
more informations.
MIPS : Requests for searches (DNA/protein) against the confidential dataset
of YEAST sequences stored at MIPS can be sent to the following email
address : becker at mips.embnet.org
GCG-formated sequences and a short description of the intentions are
preferable.
These data are steadily released (see YEAST issues).
SGB : The Saccharomyces Genome Database of Standford (SGB or SacchDB) is
available at the WWW server. To access this information using one
of the many WWW clients simply "Open URL" and enter the following
information : http://genome-www.stanford.edu/
---------------------------------------------------------------------------
CHR I (Public sequences) : BUSSEY 223 123 bp
Nr Cosmid Accession Size Date
Number (bp)
1 - L05027 8 700 24/11/92
2 - L04459 2 001 06/05/93
3 - L05146 29 410 23/08/93
overlap with 1 -8 700 23/08/94
4 - L20125 6 344 30/12/93
5 - L28920 51 950 04/04/94
6 - L22015 41 987 18/04/94
7 - U12980 101 657 07/12/94
overlaps -10 226 21/12/94
---------------------
223 123 bp 31/12/94
---------------------------------------------------------------------------
CHR II (Public sequences) : FELDMANN 807 188 bp
The complete sequence can be retrieved by FTP to the following addresses :
ftp.ebi.ac.uk (193.62.196.6) (/pub/databases/yeast/chrII)
ftp.mips.embnet.org (141.61.66.2) ([anonymous.yeast.chrII])
genome-ftp.stanford.edu (36.69.0.79) (/pub/yeast/genome_seq/chrII)
ncbi.nlm.nih.gov (130.14.25.1) (/repository/yeast/chrII)
---------------------------------------------------------------------------
CHR III (Public sequences) : OLIVER 315 338 bp
The complete sequence can be retrieved by FTP to the following addresses :
ftp.ebi.ac.uk (193.62.196.6) (/pub/databases/yeast/chrIII)
ftp.mips.embnet.org (141.61.66.2) ([anonymous.yeast.chrIII])
genome-ftp.stanford.edu (36.69.0.79) (/pub/yeast/genome_seq/chrIII)
ncbi.nlm.nih.gov (130.14.25.1) (/repository/yeast/chrIII)
---------------------------------------------------------------------------
CHR IV RIGHT 1 (Public sequences) : JOHNSTON 0 bp
Nr Cosmid Accession Size Date
Number (bp)
- - - - -
--------------------
0 bp 31/12/94
---------------------------------------------------------------------------
CHR IV RIGHT 2 (Public sequences) : DAVIS 0 bp
Nr Cosmid Accession Size Date
Number (bp)
- - - - -
--------------------
0 bp 31/12/94
---------------------------------------------------------------------------
CHR IV LEFT 1 (Public sequences) : BARRELL 39 335 bp
Nr Cosmid Accession Size Date
Number (bp)
1 9395 Z46727 39 335 20/11/92
--------------------
39 335 bp 31/12/94
---------------------------------------------------------------------------
CHR IV LEFT 2 (Public sequences) : JACQ 32 821 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Foury X82086 32 821 14/10/94
--------------------
32 821 bp 31/12/94
---------------------------------------------------------------------------
CHR V (Public sequences) : DAVIS 569 202 bp
The complete sequence in Genbank format of chr V can be retrieved at the
WWW server of the Moose. To access this information using one of the many
WWW clients simply "Open URL" and enter the following information :
http://alces.med.umn.edu/yt/yeast-chr.html
Nr Cosmid Accession Size Date
Number (bp)
1 YSCSYGP5 L11229 15 077 15/02/93
2 YSCSYGP4 L11120 9 704 12/04/93
3 YSCSYGP3 L11119 9 868 12/04/93
4 YSCSYGP1 L10718 15 978 19/04/93
5 YSCSYGP2 L10830 36 772 27/06/93
6 9871,... U18530 62 643 19/12/94
7 9537,... U18778 66 030 19/12/94
8 8199,... U18779 36 872 19/12/94
9 9669,... U18795 50 849 21/12/94
10 9379,... U18796 43 100 21/12/94
11 6592,... U18813 40 565 21/12/94
12 3612,... U18814 8 443 21/12/94
13 9747,... U18839 64 797 21/12/94
14 9781,... U18916 68 303 21/12/94
15 8229,... U18917 37 883 21/12/94
16 9163,... U18922 64 044 21/12/94
overlaps -61 726 21/12/94
--------------------
569 202 bp 31/12/94
---------------------------------------------------------------------------
(*) CHR VI (Public sequences) : MURAKAMI (and BARRELL) 19 882 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Barrell Z46255 19 882 24/10/94
--------------------
19 882 bp 31/12/94
NB : 270 000 bp by MURAKAMI are still terminated, still confidential and
will be public in May 95.
---------------------------------------------------------------------------
CHR VII (Public sequences) : TETTELIN 35 214 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Foury S58126 16 956 10/07/90
2 Foury X83099 18 258 16/12/94
--------------------
35 214 bp 01/01/95
---------------------------------------------------------------------------
CHR VIII (Public sequences) : JOHNSTON 562 638 bp
The complete sequence can be retrieved by FTP to the following addresses :
ftp.ebi.ac.uk (193.62.196.6) (/pub/databases/yeast/chrVIII)
ftp.mips.embnet.org (141.61.66.2) ([anonymous.yeast.chrVIII])
genome-ftp.stanford.edu (36.69.0.79) (/pub/yeast/genome_seq/chrVIII)
ncbi.nlm.nih.gov (130.14.25.1) (/repository/yeast/chrVIII)
Nr Cosmid Accession Size Date
Number (bp)
1 YSCH9196 U11583 55 070 05/07/94
2 YSCH9433 U11582 29 276 05/07/94
3 YSCHL5018 U11581 16 274 10/07/94
4 YSCH9780 U10555 24 431 21/06/94
5 YSCHL2825 U10400 18 715 21/06/94
6 YSCH8082 U10399 28 124 21/06/94
7 YSCH8179 U00062 44 113 19/05/94
8 YSCH8025 U00061 27 816 18/05/94
9 YSCH9205 U10556 39 203 21/06/94
10 YSCH9332 U00060 36 176 18/05/94
11 YSCH8263 U00059 39 954 11/05/94
12 YSCH9315 U10398 30 350 21/06/94
13 YSCH9666 U10397 39 057 21/06/94
14 YSCH9986 U00027 41 663 26/02/94
15 YSCH9186 U00028 10 801 26/02/94
16 YSCH9998 U00030 35 600 26/02/94
17 YSCH9177 U00029 52 664 26/02/94
overlaps -6 652 01/09/94
--------------------
562 638 bp 31/12/94
---------------------------------------------------------------------------
CHR IX (Public sequences) : BARRELL 439 885 bp
The complete sequence of chr IX has been submitted in one piece :
Nr Cosmid Accession Size Date
Number (bp)
1 chr IX Z47047 439 885 22/12/94
--------------------
439 885 bp 31/12/94
The list of the 14 separate cosmids :
Nr Cosmid Accession Size Date
Number (bp)
1 9877 Z37996 17 731 06/10/94
2 9167 Z37997 17 421 06/10/94
3 L4357 Z38062 75 317 12/10/94
4 L5610 Z38060 37 730 12/10/94
5 9168 Z38113 42 793 12/10/94
6 9687 Z38059 21 431 12/10/94
7 4554 Z38061 19 817 15/10/94
8 9150 Z38125 43 504 18/10/94
9 9910 Z46728 25 761 20/11/94
10 8277 Z46833 26 142 30/11/94
11 9905 Z46861 33 954 02/12/94
12 3299 Z46881 30 977 05/12/94
13 8224 Z46902 8 956 07/12/94
14 9402 Z46921 38 990 09/12/94
overlaps -639 22/12/94
--------------------
439 885 bp 31/12/94
---------------------------------------------------------------------------
CHR X (Public sequences) : GALIBERT 120 853 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Zimmermann X77087 9 464 02/08/94
2 Galibert L26347 8 236 07/08/94
3 Hilger Z34098 40 257 03/06/94
4 Hilger Z34288 17 137 09/06/94
5 Foury X77688 36 016 22/09/94
6 Zimmermann X77923 9 743
--------------------
120 853 bp 31/12/94
---------------------------------------------------------------------------
CHR XI (Public sequences) : DUJON 666 448 bp
The complete sequence can be retrieved by FTP to the following addresses :
ftp.ebi.ac.uk (193.62.196.6) (/pub/databases/yeast/chrXI)
ftp.mips.embnet.org (141.61.66.2) ([anonymous.yeast.chrXI])
genome-ftp.stanford.edu (36.69.0.79) (/pub/yeast/genome_seq/chrXI)
ncbi.nlm.nih.gov (130.14.25.1) (/repository/yeast/chrXI)
---------------------------------------------------------------------------
CHR XII RIGHT (Public sequences) : JOHNSTON 186 339 bp
Nr Cosmid Accession Size Date
Number (bp)
1 8167 U14913 38 868 23/09/94
2 8479 U17244 32 494 23/11/94
3 9328 U17245 14 827 23/11/94
4 9470 U17246 40 738 23/11/94
5 L2142 U17247 19 198 23/11/94
6 8003 U17243 40 214 07/12/94
--------------------
186 339 bp 31/12/94
---------------------------------------------------------------------------
CHR XII LEFT (Public sequences) : HOHEISEL 0 bp
Nr Cosmid Accession Size Date
Number (bp)
- - - - -
--------------------
0 bp 31/12/94
---------------------------------------------------------------------------
CHR XIII (Public sequences) : BARRELL 162 137 bp
Nr Cosmid Accession Size Date
Number (bp)
1 9514 X80836 13 841 09/08/94
2 8175 X80835 15 581 09/08/94
3 9745 Z38114 19 975 15/10/94
4 8248 Z46373 25 135 27/10/94
5 8337 Z46659 34 506 15/11/94
6 9725 Z46660 32 148 15/11/94
7 9958 Z46729 20 951 20/11/94
--------------------
162 137 bp 31/12/94
---------------------------------------------------------------------------
CHR XIV (Public sequences) : PHILIPPSEN 76 172 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Volckaert X77395 23 901 01/06/94
2 Volckaert X77114 8 887 02/08/94
3 Foury X78898 35 161 24/11/94
4 Foury X83226 8 223 15/12/94
--------------------
76 172 bp 31/12/94
---------------------------------------------------------------------------
CHR XV (Public sequences) : DUJON 39 307 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Schweizer X75449 10 270 01/11/94
2 Schweiser X83121 39 307 07/12/94
overlap with 1 -10 270 07/12/94
--------------------
39 307 bp 31/12/94
---------------------------------------------------------------------------
CHR XVI RIGHT 1 (Public sequences) : BARRELL 0 bp
Nr Cosmid Accession Size Date
Number (bp)
- - - - -
--------------------
0 bp 31/12/94
---------------------------------------------------------------------------
CHR XVI RIGHT 2 (Public sequences) : JOHNSTON 0 bp
Nr Cosmid Accession Size Date
Number (bp)
- - - - -
--------------------
0 bp 31/12/94
---------------------------------------------------------------------------
CHR XVI LEFT 1 (Public sequences) : BUSSEY 10 450 bp
Nr Cosmid Accession Size Date
Number (bp)
1 Bussey L33835 10 450 21/06/94
--------------------
10 450 bp 31/12/94
---------------------------------------------------------------------------
CHR XVI LEFT 2 (Public sequences) : GOFFEAU 0 bp
Nr Cosmid Accession Size Date
Number (bp)
- - - - -
--------------------
0 bp 31/12/94
---------------------------------------------------------------------------
