2008/4/23 Narges Habibi <narges.habibi from gmail.com>:
> Hi all,
>> I'm doing a project on "Protein Contact Map Prediction" and I use some
> features for nueral network's input, including Secondary Structure of a
> given Amino Acid. There are several ways:
>> 1- getting dssp file for each pdb file (from ftp server)
> 2- extracting from pdb file (The HELIX and SHEET and TURN section)
> 3- getting ss file from www.pdb.org (as I see the given sequences in this
> file don't match with the pdb files, why?)
>> What do you suggest? What method is more accurate?
I have summarised the various replies to this and similar questions
from the archive into the PDB FAQ here:
http://pdbwiki.org/index.php/PDB_FAQ#Q:_How_do_I_find.2Fpredict.2Fdisplay_secondary_structure.3F
Comments and feedback on this summary are appreciated.
Dan.
> Thanks in advance
>> --
> Narges Habibi
>> TO UNSUBSCRIBE OR CHANGE YOUR SUBSCRIPTION OPTIONS, please see
>https://lists.sdsc.edu/mailman/listinfo.cgi/pdb-l .
>
--
hello
