Emir Khatipov wrote:
>> Guys,
> It drives me crazy that I cannot remember where I saw a webtool that
> scrambles a given peptide sequence. That was not a primary function of that
> tool, and most probably that was a motif search program. Could someone
> remind me where on the web I could scramble the sequences. If you have other
> suggestions how I could do that without the web, please share your
> knowledge. I need to scramble about 60 peptides, and would hate to do that
> "by hand", saying nothing that the latter would introduce an "educated
> bias".
I think the EMBOSS Shuffleseq program should do what you want. There
are a few web interfaces to it around, such as:
http://bioweb.pasteur.fr/seqanal/interfaces/shuffleseq.html
Hope this helps
Simon.
