IUBio

CD alpha helix percentage

Dr. Eugene Gussakovsky 03-9683409 vh gussak at agri.gov.il
Thu Jul 1 01:30:04 EST 1999


On Wed, 30 Jun 1999, Peter Prevelige wrote:

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> Far UV CD spectra should be calculated in terms of deg cm2 dmol/ AMINO
> ACID. In this manner, tey are independent of the protein concentration,
> as well as the molecular weight of the protein. Therefore, there is no
> concentration dependent change in helicity, unless there is molecular
> association going on. 
> 
> 
> 
> Young Chai wrote:
> > 
> > Could you tell me  that there are any differences of the percentage of
> > alpha helix from CD spectra with different protein concentration?
> > I appreciate kind answers.
> > 
> > Young Chai
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> 
But a CD spectrum intensity does depend on the protein concentration. So
to calculate a secondary structure from CD, the protein concentration is
necessary while the sendary structure itself is concetration-independent
as Prof.Prevelige noted correctly.

Best wishes.
Dr.Eugene Gussakovsky

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