Feel free to download the PDB analysis program (which can do the number
crunching for contact maps):
http://genome-www.stanford.edu/~sac/pdb/
You can also view contact maps using a Java applet being developed by
Dirk Walther and myself:
http://genome-www.stanford.edu/Sacch3D/structure.htmlhttp://www.embl-heidelberg.de/cgi/viewer.pl
(Use the "Dist Matrix" option under the viewer's "Tools" menu).
Steve Chervitz
sac at genome.stanford.edu
Gregers Rom Andersen wrote:
> On bionet.xtallography you write:
>>> I've written a program that will do this sort of analysis, as well as
> some other analysis of PDB structures. It runs on Macs only (but could
> be ported to other platforms if there is interest). Be warned that it
> does not produce fancy graphical output. I use it to generate output
> files which can be analyzed by other programs. For example, it can
> export the contact data as a 2D array which can be imported into a
> spreadsheet program.
>>> I would very much like to get the Mac version !!!
>> Gregers
>>gregers at kemi.aau.dk>
