: Hi,
: Does anyone know where I can get the algorithm for
: performing minimum RMS deviation alignment between two
: protein chains?
Hi Alexander,
I have a program called ProFit which will do the fitting for you; it will
run from a script file so you can easily use it to run through several
thousand structures. It's available via my Web page.
I also have a program called genloop which will create a backbone (N,CA,C)
or CA trace from a set of torsion angles. Contact me by EMail if you
want a copy of this.
Best wishes,
Andrew
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Dr. Andrew C.R. Martin, University College London & SciTech Software
EMAIL: martin at biochem.ucl.ac.uk Tel:(Work) +44(0)171 419 3890
URL: http://www.biochem.ucl.ac.uk/~martin (Home) +44(0)1372 275775
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