[ On 21 Jul 1995 16:39:26 +0400 ]
[ andyg at vnigen.msk.su (Igor Grigoriev) wrote: ]
| Dear Colleagues,
| During an analysis of Brookhaven Protein Databank I met that
| some description of secondary structure for several proteins
| was undetermined or half-determined.
| Could you please help me to find a program for determination
| of protein secondary structure on basis of 3D coordinates
| obtained from Brookhaven PDB. The program should run under DOS
| on PC.
It has already been done for you, have a look at DSSP:
<http://www.sander.embl-heidelberg.de/dssp/>
The DSSP program was designed by Wolfgang Kabsch and Chris Sander to
standardize secondary structure assignment. The DSSP database is a
database of secondary structure assignments (and much more) for all of
the entries in the Protein Data Bank (PDB).
Databases files:
<ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/dssp>
Hope this helps!
;;; Marcel
--
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Marcel TURCOTTE Université de Montréal
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<A HREF="http://www.IRO.UMontreal.CA/people/turcotte/">URL</A>
