flo at UNIXG.UBC.CA wrote:
: Dear Netters;
: Does anyone know of a program that takes 3-D coordinates of a protein,
: interprets secondary structures present, and outputs a linear secondary
: structure assignment underneath the primary sequence ?
: I would like to be able to compare predicted secondary structures (e.g.
: PredProtein server) with known secondary structure(s) of other protein(s)
: in a given family.
: I will summarize replies - Thanks in advance,
: Roger Graham
: UBC Microbiology
: Vancouver
:flo at unixg.ubc.ca
Both the GCG (Genetics Computer Group) sequence analysis
suite of programs, and the PSA (Protein Sequence Analysis)
package by Gary Gilliland and James Jenson will output that
style of data from a Chou-Fasman prediction, and GCG will also
give you GOR style predictions as well.
-Brian
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