computer models of troponin C and Calmodulin
Gerard Kleijwegt
gerard at rigel.bmc.uu.se
Thu Sep 2 10:37:03 EST 1993
In article <jel.3.0 at as.tsa.brown.edu>, jel at as.tsa.brown.edu (Joe Lucas) writes:
|> Does anyone know of any computer models of these proteins, and if so could
|> you site some sources?
|> -Joe
Calmodulin in the FULL PDB release:
... FILE 1trc.pdb ... ID 1trc ...
HEADER CALCIUM BINDING PROTEIN 18-JAN-90 1TRC
REVDAT 1 15-OCT-91 1TRC 0
COMPND CALMODULIN (/TR=2=C$ FRAGMENT COMPRISING RESIDUES 78 - 148
COMPND 2 OF THE INTACT MOLECULE)
SOURCE BULL (BOS $TAURUS) TESTES
AUTHOR L.SJOLIN,L.A.SVENSSON,E.PRINCE,S.SUNDELL
JRNL AUTH L.SJOLIN,L.A.SVENSSON,E.PRINCE,S.SUNDELL
JRNL TITL PHASE IMPROVEMENT IN THE STRUCTURE INTERPRETATION
JRNL TITL 2 OF FRAGMENT /TR=2=C$ FORM BULL TESTIS CALMODULIN
JRNL TITL 3 USING COMBINED ENTROPY MAXIMIZATION AND SOLVENT
JRNL TITL 4 FLATTENING
JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 46 209 1990
JRNL REFN ASTM ASBSDK DK ISSN 0108-7681 622
... FILE 2cln.pdb ... ID 2cln ...
HEADER CALCIUM BINDING PROTEIN 03-FEB-88 2CLN 2CLN 3
REVDAT 1 16-JUL-88 2CLN 0 2CLN 8
COMPND N==Z115== TRIMETHYLCALMODULIN COMPLEX WITH TRIFLUOPERAZINE 2CLN 4
COMPND 2 (MODEL) 2CLN 5
SOURCE BOVINE (BOS $TAURUS) BRAIN 2CLN 6
AUTHOR N.C.J.STRYNADKA,M.N.G.JAMES 2CLN 7
JRNL AUTH N.C.J.STRYNADKA,M.N.G.JAMES 2CLN 9
JRNL TITL TWO TRIFLUOPERAZINE-*BINDING SITES ON CALMODULIN 2CLN 10
JRNL TITL 2 PREDICTED FROM COMPARATIVE MOLECULAR MODELLING 2CLN 11
JRNL TITL 3 WITH TROPONIN-*C 2CLN 12
JRNL REF PROTEINS.STRUCT.,FUNCT., V. 3 1 1988 2CLN 13
JRNL REF 2 GENET. 2CLN 14
JRNL REFN ASTM PSFGEY US ISSN 0887-3585 867 2CLN 15
... FILE 3cln.pdb ... ID 3cln ...
HEADER CALCIUM BINDING PROTEIN 11-MAY-88 3CLN
REVDAT 2 09-JAN-89 3CLNA 1 JRNL
REVDAT 1 16-JUL-88 3CLN 0
COMPND CALMODULIN
SOURCE RAT (RATTUS $RATTUS) TESTIS
AUTHOR Y.S.BABU,C.E.BUGG,W.J.COOK
REVDAT 2 09-JAN-89 3CLNA 1 JRNL
JRNL AUTH Y.S.BABU,C.E.BUGG,W.J.COOK
JRNL TITL STRUCTURE OF CALMODULIN REFINED AT 2.2 ANGSTROMS
JRNL TITL 2 RESOLUTION
JRNL REF J.MOL.BIOL. V. 204 191 1988
JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 070
REMARK 6 CORRECTION. UPDATE JRNL REFERENCE TO REFLECT PUBLICATION.
... FILE 4cln.pdb ... ID 4cln ...
HEADER CALCIUM BINDING PROTEIN 24-JUN-91 4CLN 4CLN 2
REVDAT 1 15-JUL-92 4CLN 0 4CLN 6
COMPND CALMODULIN 4CLN 3
SOURCE (DROSOPHILA $MELANOGASTER) EXPRESSED IN (ESCHERICHIA $COLI) 4CLN 4
AUTHOR D.A.TAYLOR,J.S.SACK,J.F.MAUNE,K.BECKINGHAM,F.A.QUIOCHO 4CLN 5
JRNL AUTH D.A.TAYLOR,J.S.SACK,J.F.MAUNE,K.BECKINGHAM, 4CLN 7
JRNL AUTH 2 F.A.QUIOCHO 4CLN 8
JRNL TITL STRUCTURE OF A RECOMBINANT CALMODULIN FROM 4CLN 9
JRNL TITL 2 DROSOPHILA $MELANOGASTER REFINED AT 2.2-*ANGSTROMS 4CLN 10
JRNL TITL 3 RESOLUTION 4CLN 11
JRNL REF J.BIOL.CHEM. V. 266 21375 1991 4CLN 12
JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 071 4CLN 13
Calmodulin in the PDB PRE-release:
... FILE 1cll.pdb ... ID 1cll ...
HEADER PRELIMINARY 29-SEP-92 P1CLL
COMPND CALMODULIN (VETEBRATE)
SOURCE RECOMBINANT PROTEIN USING VETEBRATE SEQUENCE
AUTHOR R.CHATTOPADHYAYA,F.A.QUIOCHO
... FILE 1clm.pdb ... ID 1clm ...
HEADER PRELIMINARY 23-JAN-93 P1CLM
COMPND CALMODULIN FROM PARAMECIUM TETRAURELIA (WILD TYPE)
SOURCE PARAMECIUM TETRAURELIA
AUTHOR M.SUNDARALAINGAM
... FILE 2bbm.pdb ... ID 2bbm ...
HEADER PRELIMINARY 16-JUL-92 P2BBM
EXPDTA NMR
COMPND CALCIUM-BOUND CALMODULIN COMPLEX WITH CALMODULIN BINDING
COMPND 2 DOMAIN OF RABBIT SKELETAL MYOSIN LIGHT CHAIN KINASE
COMPND 3 (MINIMIZED AVERAGE STRUCTURE PLUS 21 MODELS)
SOURCE (DROSOPHILA $MELANOGASTER) AND SYNTHETIC PEPTIDE
AUTHOR G.M.CLORE,A.BAX,M.IKURA,A.M.GRONENBORN
Troponin in the FULL PDB release:
... FILE 1tnc.pdb ... ID 1tnc ...
HEADER CONTRACTILE SYSTEM PROTEINS 15-JUL-80 1TNC 1TNC 3
REVDAT 2 30-SEP-83 1TNCA 1 REVDAT 1TNCA 1
REVDAT 1 09-AUG-80 1TNC 0 1TNCA 2
REMARK 6 CORRECTION. INSERT REVDAT RECORDS. 30-SEP-83. 1TNCA 4
COMPND TROPONIN - CALCIUM-BINDING COMPONENT 1TNC 4
SOURCE RABBIT (ORYCTOLAGUS CUNICULUS) 1TNC 5
AUTHOR R.H.KRETSINGER,C.D.BARRY 1TNC 6
JRNL AUTH R.H.KRETSINGER,C.D.BARRY 1TNC 7
JRNL TITL THE PREDICTED STRUCTURE OF THE CALCIUM-BINDING 1TNC 8
JRNL TITL 2 COMPONENT OF TROPONIN 1TNC 9
JRNL REF BIOCHIM.BIOPHYS.ACTA V. 405 40 1975 1TNC 10
JRNL REFN ASTM BBACAQ NE ISSN 0006-3002 113 1TNC 11
... FILE 4tnc.pdb ... ID 4tnc ...
HEADER CONTRACTILE SYSTEM PROTEIN 28-SEP-87 4TNC
REVDAT 2 19-APR-89 4TNCA 1 JRNL
REVDAT 1 16-JUL-88 4TNC 0
COMPND TROPONIN C
SOURCE CHICKEN (GALLUS $GALLUS) SKELETAL MUSCLE
REMARK 2 COLLECTED AT THE CORNELL HIGH ENERGY SYNCHROTRON SOURCE.
AUTHOR M.SUNDARALINGAM
REVDAT 2 19-APR-89 4TNCA 1 JRNL
JRNL AUTH K.A.SATYSHUR,S.T.RAO,D.PYZALSKA,W.DRENDEL,
JRNL AUTH 2 M.GREASER,M.SUNDARALINGAM
JRNL TITL REFINED STRUCTURE OF CHICKEN SKELETAL MUSCLE
JRNL TITL 2 TROPONIN C IN THE TWO-CALCIUM STATE AT 2-*ANGSTROMS
JRNL TITL 3 RESOLUTION
JRNL REF J.BIOL.CHEM. V. 263 1628 1988
JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 071
... FILE 5tnc.pdb ... ID 5tnc ...
HEADER CONTRACTILE SYSTEM PROTEINS 27-MAY-88 5TNC
REVDAT 2 09-JAN-89 5TNCA 1 JRNL SEQRES
REVDAT 1 09-OCT-88 5TNC 0
COMPND TROPONIN-*C
SOURCE TURKEY (MELEAGRIS $GALLOPAVO) SKELETAL MUSCLE
AUTHOR O.HERZBERG,M.N.G.JAMES
REVDAT 2 09-JAN-89 5TNCA 1 JRNL SEQRES
JRNL AUTH O.HERZBERG,M.N.G.JAMES
JRNL TITL REFINED CRYSTAL STRUCTURE OF TROPONIN C FROM TURKEY
JRNL TITL 2 SKELETAL MUSCLE AT 2.0 ANGSTROMS RESOLUTION
JRNL REF J.MOL.BIOL. V. 203 761 1988
JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 070
Troponin in the PDB PRE release:
... FILE 1cta.pdb ... ID 1cta ...
HEADER PRELIMINARY 12-NOV-92 P1CTA
EXPDTA NMR
COMPND CHICKEN SKELETAL TROPONIN C SITE III-SITEIII HOMODIMER
COMPND 2 SCIII HOMODIMER N-ACETYL-(A101,Y112)-TROPONINC(93-126)-
COMPND 3 AMIDE DIMER
SOURCE SYNTHETIC PEPTIDE
AUTHOR G.S.SHAW,B.D.SYKES
--Gerard
******************************************************************
Gerard J. Kleywegt _____
Department of Molecular Biology | | / \
Biomedical Centre / \ --- | |
University of Uppsala | | | | | |
Uppsala | | | | | |
SWEDEN | | \ / ---
--- |____|
E-mail: gerard at xray.bmc.uu.se
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