In article <92346.200424U53077 at uicvm.uic.edu> Dong Li 312-996-0509 <U53077 at uicvm.uic.edu> writes:
>Dear netters,
>>I am looking for a better alignment program for the alignments of
>60 different proteins at same time.
>The program I am using now can line up only
>16 proteins at same time, and I have to divide all 60 proteins into
>4 groups to line them up separately, then line the 4 groups up by
>hands. It is laborious and easy to make mistakes.
>>I would be very grateful if you provide any information about it
>(or just tell me the site and dir. name so that I can FTP it.)
>>Thank you very much for attention.
>>*************************************************************************
>With malice toward none, with charity for all.......... Abraham Lincoln
>-------------------------------------------------------------------------
> Dong Li Telephone: (312) 996-0509 Fax: (312) 413-2435
> Internet: u53077 at uicvm.uic.edu Bitnet: u53077 at uicvm.bitnet>Dept. Biological Sciences, Univ. Illinois at Chicago, Chicago, IL 60680
>*************************************************************************
I have had alot of success with clustal V
(five) which can certainly cope with more than 16 sequences at a time. It is
available by anonymous ftp from the major molecular biology ftp sites. I would
go and find out the details of sitename and directory but I am a novice at UNIX
and rn and am pretty sure that I would not be able to get back to your message
again to reply!!
Good hunting
Toby "I dont understand unix but I can spell potato".
Toby Murcott Murcott at uk.ac.bristol.bsa
Dept. of Biochemistry
University of Bristol
UK.
