In article <9206aa$qi0$1 at mercury.hgmp.mrc.ac.uk>,
rob dean <tabco at arches.uga.edu> wrote:
>his may not be the right thread for this question but I will throw it
>out anyway. In consense when two sequences are exactly the same why do
>you not get 100/100 for the bootstrap values? I have looked a all 100
>trees individually and in each case you get the straight line indicating
>complete similarity but when you use consense you get a number ranging
>from 94-96. Any thoughts?
I'm not sure why you said "two sequences are exactly the same", perhaps you
meant "two trees are exactly the same". In such a case you should get
100 percent for the bootstrap values. Therefore if you are right that all
the trees are the same, there is a bug. To check this, send me the input
file of trees (not as an Attachment but as the body of an email message.
I will double check and let people know what I find.
Joe Felsenstein joe at genetics.washington.edu
Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360 USA