Any suggestions for the best (and hopefully simplest) way to discover if
the substitutions in my DNA alignment are saturated?
I can use DNAdist (PHYLIP) to find the rates of substitution between taxa
and Hillis's g1 test to indicate that the data set is not random. Neither
of these directly address the question of saturation.
Thank you in advance,
Dave Carmean carmean at sfu.ca
Simon Fraser University
Burnaby, BC CANADA V5A 1S6