Along the lines re: Dr. Farmers request for a good alignment program, I was
wondering if anyone knew of a good program for aligning amino acid sequences.
I would prefer something that I could ftp or obtain easily, but any good
program will do. I am specifically looking for a program that does not use
chemical properties of amino acids but rather a mutation matrix to align, such
as the mutation matrix in Gonnet et al, Science 256: 1443-1445.
Thanks in advance,
Warren C. Lathe III (Trey)
Biology Dept. University of Rochester
email: trey at thelab.biology.rochester.edumadda at troi.cc.rochester.edu