IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

Codon usage table for Chlamydomonas

Antonio R. Franco bf1rodri at es.uco.cc
Tue Sep 7 13:13:44 EST 1993


------------------------------ Start of body part 1

	After checking the codon usage table I recently posted, I have noticed
some sequences have been included twice as a consequence of having taken in
consideration both the genomic and the cDNA sequences at the same time.
	I have excluded one of these sequences, and a corrected version of
the table is posted. Notice no significant changes in relation to the old
table are seen. But this table is not biased at all, and is a work better done.


------------------------------ Start of body part 2


 CODONFREQUENCY  September 7, 1993  18:38

 From an existing codon frequency file: d10542.cod  FileCheck: 8270

 CODONFREQUENCY  July 22, 1993  12:37
>From          : d10542.seq  check: 2314  from: 32  to: 1948
LOCUS       CREGLE       2379 bp ss-mRNA            PLN       12-SEP-1992
DEFINITION  C. reinhardtii mRNA for gamete lytic enzyme (GLE), complete cds.
ACCESSION   D10542 D90503
KEYWORDS    GLE preproprotein; calcium binding; . . . 

 From an existing codon frequency file: d90206.cod  FileCheck: 8368

 CODONFREQUENCY  July 21, 1993  13:08
>From          : d90206.seq  check: 5779  from: 592  to: 687
 continuing on: d90206.seq  check: 5779  from: 950  to: 999
 continuing on: d90206.seq  check: 5779  from: 1185  to: 1239
 continuing on: d90206.seq  check: 5779  from: 1455  to: 1529
 continuing on: d90206.seq  check: 5779  from: 1850  to: 1904 . . . 

 From an existing codon frequency file: j02774.cod  FileCheck: 9251

 CODONFREQUENCY  July 21, 1993  13:03
>From          : j02774.seq  check: 4177  from: 10  to: 456
LOCUS       CREC552       685 bp ss-mRNA            PLN       31-DEC-1987
DEFINITION  C.reinhardtii pre-apocytochrome c-552 mRNA.
ACCESSION   J02774
KEYWORDS    apocytochrome. . . . 

 From an existing codon frequency file: j05524.cod  FileCheck: 1502

 CODONFREQUENCY  July 21, 1993  13:01
>From          : j05524.seq  check: 3475  from: 22  to: 459
LOCUS       CREAPCYN      577 bp ss-mRNA            PLN       15-SEP-1990
DEFINITION  C.reinhardtii apoplastocyanin (PC6-2) mRNA, complete cds.
ACCESSION   J05524
KEYWORDS    apoplastocyanin. . . . 

 From an existing codon frequency file: k03281.cod  FileCheck: 8467

 CODONFREQUENCY  July 26, 1993  14:50
>From          : k03281.seq  check: 5419  from: 133  to: 156
 continuing on: k03281.seq  check: 5419  from: 305  to: 449
 continuing on: k03281.seq  check: 5419  from: 708  to: 932
 continuing on: k03281.seq  check: 5419  from: 1070  to: 2007
LOCUS       CRETBBB      2461 bp ds-DNA             PLN       24-NOV-1992 . . . 

 From an existing codon frequency file: m11448.cod  FileCheck: 3674

 CODONFREQUENCY  July 26, 1993  14:49
>From          : m11448.seq  check: 6788  from: 144  to: 188
 continuing on: m11448.seq  check: 6788  from: 425  to: 647
 continuing on: m11448.seq  check: 6788  from: 866  to: 1953
LOCUS       CRETBA2A     2150 bp ds-DNA             PLN       02-MAR-1993
DEFINITION  Chlamydomonas reinhardtii alpha-2 tubulin gene, complete cds. . . . 

 From an existing codon frequency file: m15187.cod  FileCheck: 4131

 CODONFREQUENCY  July 22, 1993  12:40
>From          : m15187.seq  check: 2138  from: 154  to: 891
LOCUS       CREOEE2A     1552 bp ss-mRNA            PLN       15-MAR-1989
DEFINITION  C.reinhardtii oxygen-evolving enhancer protein 2 (OEE2) mRNA,
            complete cds.
ACCESSION   M15187 . . . 

 From an existing codon frequency file: m20729.cod  FileCheck: 1300

 CODONFREQUENCY  March 20, 1992  16:58
>From          : M20728.Gb_Pl  check: 3916  from: 285  to: 369
 continuing on: M20728.Gb_Pl  check: 3916  from: 722  to: 879
 continuing on: M20728.Gb_Pl  check: 3916  from: 954  to: 1034
 continuing on: M20728.Gb_Pl  check: 3916  from: 1241  to: 1305
 continuing on: M20728.Gb_Pl  check: 3916  from: 1456  to: 1495 . . . 

 From an existing codon frequency file: m24072.cod  FileCheck: 7996

 CODONFREQUENCY  July 21, 1993  13:05
>From          : m24072.seq  check: 6643  from: 417  to: 491
 continuing on: m24072.seq  check: 6643  from: 648  to: 708
 continuing on: m24072.seq  check: 6643  from: 951  to: 1270
 continuing on: m24072.seq  check: 6643  from: 1517  to: 1822
LOCUS       CRECABA      2290 bp ds-DNA             PLN       15-DEC-1989 . . . 

 From an existing codon frequency file: m25916.cod  FileCheck: 2367

 CODONFREQUENCY  July 26, 1993  15:20
>From          : m25916.seq  check: 6851  from: 143  to: 187
 continuing on: m25916.seq  check: 6851  from: 425  to: 647
 continuing on: m25916.seq  check: 6851  from: 845  to: 1932
LOCUS       CRETBA1A     2246 bp ds-DNA             PLN       02-MAR-1993
DEFINITION  Chlamydomonas reinhardtii alpha-1 tubulin gene, complete cds. . . . 

 From an existing codon frequency file: m25918.cod  FileCheck: 9363

 CODONFREQUENCY  July 26, 1993  15:23
>From          : m25918.seq  check: 8158  from: 161  to: 184
 continuing on: m25918.seq  check: 8158  from: 311  to: 455
 continuing on: m25918.seq  check: 8158  from: 815  to: 1039
 continuing on: m25918.seq  check: 8158  from: 1174  to: 2111
LOCUS       CRETBBA      2668 bp ds-DNA             PLN       24-NOV-1992 . . . 

 From an existing codon frequency file: m36123.cod  FileCheck: 5797

 CODONFREQUENCY  July 22, 1993  12:47
>From          : m36123.seq  check: 6737  from: 28  to: 1155
LOCUS       CREPHOSRI    1245 bp ss-mRNA            PLN       15-AUG-1990
DEFINITION  C.reinhardtii phosphoribulokinase mRNA, complete cds.
ACCESSION   M36123
KEYWORDS    phosphoribulokinase. . . . 

 From an existing codon frequency file: m62962.cod  FileCheck: 5387

 CODONFREQUENCY  July 22, 1993  12:49
>From          : m62962.seq  check: 512  from: 51  to: 1277
LOCUS       CRERBCOA     1693 bp ss-mRNA            PLN       13-MAR-1991
DEFINITION  C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds.
ACCESSION   M62962 . . . 

 From an existing codon frequency file: m67448.cod  FileCheck: 1667

 CODONFREQUENCY  July 22, 1993  12:35
>From          : m67448.seq  check: 3430  from: 932  to: 1148
 continuing on: m67448.seq  check: 3430  from: 1284  to: 1396
 continuing on: m67448.seq  check: 3430  from: 1784  to: 1900
LOCUS       CRECYTC6     2607 bp ds-DNA             PLN       10-SEP-1991
DEFINITION  C.reinhardtii cytochrome c6 gene, complete cds. . . . 

 From an existing codon frequency file: m73493.cod  FileCheck: 7693

 CODONFREQUENCY  February 11, 1992  19:42
>From          : Creatpc.Gb_Pl  check: 2394  from: 27  to: 122
 continuing on: Creatpc.Gb_Pl  check: 2394  from: 208  to: 363
 continuing on: Creatpc.Gb_Pl  check: 2394  from: 517  to: 663
 continuing on: Creatpc.Gb_Pl  check: 2394  from: 931  to: 1042
 continuing on: Creatpc.Gb_Pl  check: 2394  from: 1751  to: 2316 . . . 

 From an existing codon frequency file: m87526.cod  FileCheck: 5896

 CODONFREQUENCY  July 22, 1993  12:57
>From          : m87526.seq  check: 2466  from: 611  to: 715
 continuing on: m87526.seq  check: 2466  from: 868  to: 975
 continuing on: m87526.seq  check: 2466  from: 1171  to: 1217
 continuing on: m87526.seq  check: 2466  from: 1411  to: 1474
 continuing on: m87526.seq  check: 2466  from: 1762  to: 2023 . . . 

 From an existing codon frequency file: s44199.cod  FileCheck: 1386

 CODONFREQUENCY  July 26, 1993  15:17
>From          : s44199.seq  check: 3753  from: 1088  to: 1696
LOCUS       S44199       2242 bp    DNA             PLN       10-NOV-1992
DEFINITION  class IV zygote specific cell wall hydroxyproline-rich glycoprotein
            [Chlamydomonas reinhardtii, Genomic, 2242 nt]
ACCESSION   S44199 . . . 

 From an existing codon frequency file: x04471.cod  FileCheck: 3637

 CODONFREQUENCY  February 11, 1992  20:01
>From          : Crerbcs1.Gb_Pl  check: 4319  from: 406  to: 569
 continuing on: Crerbcs1.Gb_Pl  check: 4319  from: 708  to: 787
 continuing on: Crerbcs1.Gb_Pl  check: 4319  from: 1016  to: 1101
 continuing on: Crerbcs1.Gb_Pl  check: 4319  from: 1306  to: 1533
LOCUS       CRERBCS1     2369 bp ds-DNA             PLN       31-DEC-1987 . . . 

 From an existing codon frequency file: x04472.cod  FileCheck: 2694

 CODONFREQUENCY  July 26, 1993  15:10
>From          : x04472.seq  check: 1364  from: 1143  to: 1306
 continuing on: x04472.seq  check: 1364  from: 1452  to: 1531
 continuing on: x04472.seq  check: 1364  from: 1861  to: 1946
 continuing on: x04472.seq  check: 1364  from: 2185  to: 2412
LOCUS       CRRBCS2      2785 bp    DNA             PLN       28-FEB-1992 . . . 

 From an existing codon frequency file: x13495.cod  FileCheck: 6435

 CODONFREQUENCY  February 12, 1992  09:29
>From          : Crepsaf.Gb_Pl  check: 8034  from: 19  to: 702
LOCUS       CREPSAF      1227 bp ss-mRNA            PLN       15-MAR-1990
DEFINITION  Chlamydomonas reinhardtii mRNA for 17 kd P21 protein of photosystem
            I.
ACCESSION   X13495 . . . 

 From an existing codon frequency file: x13496.cod  FileCheck: 6764

 CODONFREQUENCY  February 12, 1992  09:30
>From          : Creps1p30.Gb_Pl  check: 239  from: 40  to: 333
LOCUS       CREPS1P30     579 bp ss-mRNA            PLN       15-MAR-1990
DEFINITION  Chlamydomonas reinhardtii mRNA for 8.1 kd P30 protein of
            photosystem I.
ACCESSION   X13496 . . . 

 From an existing codon frequency file: x13826.cod  FileCheck: 3540

 CODONFREQUENCY  July 21, 1993  11:40
>From          : CREOEE1.SEQ*  check: 3660  from: 154  to: 1029
LOCUS       CREOEE1      1714 bp ss-mRNA            PLN       15-MAR-1990
DEFINITION  Chlamydomonas reinhardtii psb1 mRNA for OEE1 protein of photosystem
            II (oxygen-evolving enhancer protein).
ACCESSION   X13826 . . . 

 From an existing codon frequency file: x13832.cod  FileCheck: 1618

 CODONFREQUENCY  July 21, 1993  11:54
>From          : CREOEE3.SEQ*  check: 7382  from: 307  to: 906
LOCUS       CREOEE3      1542 bp ss-mRNA            PLN       15-MAR-1990
DEFINITION  Chlamydomonas reinhardtii psb3 mRNA for OEE3 protein of photosystem
            II (oxygen-evolving protein).
ACCESSION   X13832 . . . 

 From an existing codon frequency file: x14549.cod  FileCheck: 1938

 CODONFREQUENCY  February 11, 1992  20:06
>From          : Crersp3.Gb_Pl  check: 9230  from: 361  to: 438
 continuing on: Crersp3.Gb_Pl  check: 9230  from: 547  to: 692
 continuing on: Crersp3.Gb_Pl  check: 9230  from: 820  to: 1040
 continuing on: Crersp3.Gb_Pl  check: 9230  from: 1268  to: 2373
LOCUS       CRERSP3      3000 bp ds-DNA             PLN       15-MAR-1990 . . . 

 From an existing codon frequency file: x15053.cod  FileCheck: 8782

 CODONFREQUENCY  February 11, 1992  19:48
>From          : Crehsp22k.Gb_Pl  check: 8851  from: 87  to: 560
LOCUS       CREHSP22K    1097 bp ss-mRNA            PLN       15-MAR-1990
DEFINITION  Chlamydomonas reinhardtii 22kDa heat shock protein.
ACCESSION   X15053
KEYWORDS    heat shock protein. . . . 

 From an existing codon frequency file: x15164.cod  FileCheck: 4804

 CODONFREQUENCY  July 26, 1993  15:07
>From          : x15164.seq  check: 9780  from: 13  to: 405
LOCUS       CRPSAH        816 bp    RNA             PLN       19-DEC-1989
DEFINITION  Chlamydomonas reinhardhii psaH mRNA for 11KD subunit of photosystem
            I (polypeptide 28)
ACCESSION   X15164 . . . 

 From an existing codon frequency file: x15165.cod  FileCheck: 8750

 CODONFREQUENCY  July 26, 1993  15:05
>From  



More information about the Chlamy mailing list

Send comments to us at biosci-help [At] net.bio.net