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[Arabidopsis] rice gene model annotations from RAP-DB

Loraine, Ann via arab-gen%40net.bio.net (by Ann.Loraine from uncc.edu)
Thu Dec 19 08:28:42 EST 2013


Recently some-one posted a question about the RAP-DB rice gene model annota=

In case this will be useful, we've added a new track for the RAP-DB gene mo=
dels to Integrated Genome Browser =96 http://bioviz.org/igb

The data are also available as a "BED-Detail" file from the IGBQuickLoad si=
te. (For information about BED-detail, see http://genome.ucsc.edu/FAQ/FAQfo=
rmat.html and to view a file listing of the rice IGBQuickLoad site go to ht=

When you visit the latest rice genome in IGB, two sets of gene models will =
load =96 including both the RAP-DB annotations (April 2013 releases) and al=
so the RGAP/MSU7 gene models.

Moving ahead we're aiming to create a non-redundant set of genes models and=
 functional annotations that will include both the RAP-DB and RGAP/MSU7 ann=
otations. The goal of this is to create a merged data set that will be usef=
ul for analysis of RNA-Seq, ChIP-Seq and microarray data sets. If you have =
thoughts on this or know of anyone who is also doing something similar, ple=
ase let us know.

All the best,


Ann Loraine, Ph.D.
Associate Professor
Department of Bioinformatics and Genomics
University of North Carolina at Charlotte
North Carolina Research Campus
600 Laureate Way
Kannapolis, NC 28081
aloraine from uncc.edu

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