IUBio Biosequences .. Software .. Molbio soft .. Network News .. FTP

[Arabidopsis] Arabidopsis Sha Vs.Tsu-1 markers

Olivier Loudet via arab-gen%40net.bio.net (by Olivier.Loudet from versailles.inra.fr)
Tue Sep 4 17:52:12 EST 2012

You may want to use the ANATool website for that purpose
which contains genotypes for 341 SNP markers x 591 accessions (including 
Sha and Tsu-1) and tools to interrogate this dataset in different useful 
ways. For example you can find the minimal marker set to discriminate 
between 2 or more accessions, or the minimal fingerprint of one accession 
(within this matrix).
This is based on Simon et al., Plant J., 2012:

Depending on your exact goal, of course Sha and Tsu-1 are also included 
among the 1001 accessions currently being sequenced:

PS: In any case, always double-check the genotypes of accessions on your 
seed lot, as there will always be (at least) punctual differences between 
different SSDs.


Le 04/09/2012    10:09,gat kr écrit:
>Hi all,
>I was wondering if anyone knows a good, reliable PCR based marker to
>distinguish between Sha and Tsu-1.
>Alternatively, does anybody know of a web based SNP tool that has these 2
>ecotypes in its database?
>Arab-gen mailing list
>Arab-gen from net.bio.net


             Olivier Loudet

   INRA, National Institute for Agricultural Research
   IJPB, Versailles, France

  V.A.S.T group -- Variation and Abiotic Stress Tolerance

      Mail: Olivier.Loudet from versailles.inra.fr
      Science: www.inra.fr/vast

   " Catch your Fire in your Turn and Let it Burn "

More information about the Arab-gen mailing list

Send comments to us at biosci-help [At] net.bio.net