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New/Updated Arabidopsis DNA 10-Jun-2000

curator at arabidopsis.org curator at arabidopsis.org
Sat Jun 10 15:21:50 EST 2000


Dear Arabidopsis researchers,

The following information is the number of Arabidopsis entries in GenBank
that are new or were updated in the last week. These sequences have been
updated in TAIR and are available for searching using TAIR BLAST and FASTA
at:

http://arabidopsis.org/blast/

http://arabidopsis.org/cgi-bin/fasta/TAIRfasta.pl

New sequences      : 48
Updated sequences  : 0
Updated annotation : 23

====================== New DNA Sequences =======================

ATH271731   AJ271731     1332bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase
      (bcat2 gene)
     bcat2 gene; branched-chain amino acid transaminase; bcat2.

ATH271732   AJ271732     1286bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase
      (bcat4 gene)
     bcat4 gene; branched-chain amino acid transaminase; bcat4.

ATH276123   AJ276123     1368bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase
      (bcat1 gene)
     bcat1 gene; branched-chain amino acid transaminase; bcat1.

ATH276124   AJ276124     1539bp    RNA      PLN      01-JUN-2000
     Arabidopsis thaliana mRNA for branched-chain amino acid transaminase 3
      (bcat3 gene)
     bcat3 gene; branched-chain amino acid transaminase 3; bcat3.

AF207994    AF207994     2304bp    mRNA     PLN      02-JUN-2000
     Arabidopsis thaliana acyl-CoA oxidase ACX3 (ACX3) mRNA, complete cds.
     ACX3; acyl-CoA oxidase ACX3.

AF223949    AF223949     2165bp    mRNA     PLN      02-JUN-2000
     Arabidopsis thaliana amidase mRNA, complete cds.
     amidase.

AF229850    AF229850     2972bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana ferritin (Fer1) gene, complete cds.
     Fer1; ferritin.

AF236376    AF236376      542bp    mRNA     PLN      02-JUN-2000
     Arabidopsis thaliana IPS1 mRNA, complete sequence.
     IPS1.

AF239718    AF239718     4013bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana SGS2 gene, complete cds.
     SGS2.

AF239719    AF239719     2254bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana SGS3 gene, complete cds.
     SGS3.

AC069470    AC069470   291898bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I clone IGF-F13E17, *** SEQUENCING IN
      PROGRESS ***, 5 unordered pieces.
     HTG; HTGS_PHASE1.

AC069471    AC069471   127042bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I clone IGF-F13K9, *** SEQUENCING IN
      PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069472    AC069472    52211bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome III clone BAC pool-F28J15, *** SEQUENCING
      IN PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069473    AC069473    85822bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome III clone BAC pool-T21B14, *** SEQUENCING
      IN PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC069474    AC069474   106390bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome III clone BAC pool-T2E22, *** SEQUENCING
      IN PROGRESS ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

F214505S12  AF214500     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-5 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S03  AF214491      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-1 allele, exon
      sequence.
     fdh.

F214505S14  AF214502     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-6 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S07  AF214495      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-3 allele, exon
      sequence.
     fdh.

F214505S06  AF214494     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-2 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S09  AF214497      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-4 allele, exon
      sequence.
     fdh.

F214505S17  AF214505      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-9 allele, exon
      sequence.
     fdh.

F214505S01  AF214489      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana cultivar Landsberg erecta fiddlehead protein (fdh)
      gene, exon sequence.
     fdh.

F214505S10  AF214498     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-4 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S11  AF214499      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-5 allele, exon
      sequence.
     fdh.

F214505S02  AF214490     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana cultivar Landsberg erecta fiddlehead protein (fdh)
      gene, complete cds.
     fdh; fiddlehead protein.

F214505S08  AF214496     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-3 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S15  AF214503      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-7 allele, exon
      sequence.
     fdh.

F214505S05  AF214493      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-2 allele, exon
      sequence.
     fdh.

F214505S04  AF214492     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-1 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S13  AF214501      656bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-6 allele, exon
      sequence.
     fdh.

F214505S16  AF214504     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-7 allele,
      complete cds.
     fdh; fiddlehead protein.

F214505S18  AF214506     1425bp    DNA      PLN      17-MAY-2000
     Arabidopsis thaliana fiddlehead protein (fdh) gene, fdh-9 allele,
      complete cds.
     fdh; fiddlehead protein.

AC069551    AC069551    92293bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 1 clone T10O22, *** SEQUENCING IN
      PROGRESS ***, 3 unordered pieces.
     HTG; HTGS_PHASE1.

AC069552    AC069552    93452bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone F17M07, *** SEQUENCING IN
      PROGRESS ***, 10 unordered pieces.
     HTG; HTGS_PHASE1.

AC069553    AC069553   110861bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone F18A12, *** SEQUENCING IN
      PROGRESS ***, 16 unordered pieces.
     HTG; HTGS_PHASE1.

AC069554    AC069554    86537bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone F19I11, *** SEQUENCING IN
      PROGRESS ***, 13 unordered pieces.
     HTG; HTGS_PHASE1.

AC069555    AC069555   107272bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone F7I20, *** SEQUENCING IN PROGRESS
      ***, 10 unordered pieces.
     HTG; HTGS_PHASE1.

AC069556    AC069556    89547bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T1G16, *** SEQUENCING IN PROGRESS
      ***, 11 unordered pieces.
     HTG; HTGS_PHASE1.

AC069557    AC069557   119935bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T29A4, *** SEQUENCING IN PROGRESS
      ***, 11 unordered pieces.
     HTG; HTGS_PHASE1.

AC069558    AC069558    97859bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T5G13, *** SEQUENCING IN PROGRESS
      ***, 15 unordered pieces.
     HTG; HTGS_PHASE1.

AF268093    AF268093     5280bp    DNA      PLN      05-JUN-2000
     Arabidopsis thaliana RNA-dependent RNA polymerase (SDE1) gene, complete
      cds.
     RNA-dependent RNA polymerase; SDE1.

AP002457    AP002457    24294bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWE13.
     HTG.

AP002458    AP002458    67517bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T22C2.
     HTG.

AP002459    AP002459    30780bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T13B17.
     HTG.

AP002460    AP002460   111554bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F1D9.
     HTG.

AP002461    AP002461    10607bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T22P15.
     HTG.

AP002462    AP002462    36329bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T8N9.
     HTG.


=========== Updated Sequence Features/Annotations  =============

AC000348    AC000348   111566bp    DNA      PLN      20-MAY-2000
     Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I,
      complete sequence.
     HTG.

AF110771    AF110771     1846bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana ammonium transporter mRNA, complete cds.
     ammonium transporter.

AF036300    AF036300     1359bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, partial cds.
     scarecrow-like 1; SCL1.

AF036301    AF036301     1231bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 3 (SCL3) mRNA, partial cds.
     scarecrow-like 3; SCL3.

AF036302    AF036302     1065bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 5 (SCL5) mRNA, partial cds.
     scarecrow-like 5; SCL5.

AF036303    AF036303     1279bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds.
     scarecrow-like 6; SCL6.

AF036304    AF036304      527bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 7 (SCL7) mRNA, partial cds.
     scarecrow-like 7; SCL7.

AF036305    AF036305     1900bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 8 (SCL8) mRNA, partial cds.
     scarecrow-like 8; SCL8.

AF036306    AF036306      726bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 9 (SCL9) mRNA, partial cds.
     scarecrow-like 9; SCL9.

AF036307    AF036307      760bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 11 (SCL11) mRNA, partial cds.
     scarecrow-like 11; SCL11.

AF036308    AF036308     1078bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 13 (SCL13) mRNA, partial cds.
     scarecrow-like 13; SCL13.

AF036309    AF036309     2635bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 14 (SCL14) mRNA, partial cds.
     scarecrow-like 14; SCL14.

AC011810    AC011810   103157bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete
      sequence.
     HTG.

ATF8J2      AL132969    99814bp    DNA      PLN      19-APR-2000
     Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2
     beta-galactosidase precursor-like protein; F8J2_10; Spot 3 protein and
      vacuolar sorting receptor homolog; F8J2_20; putative protein; F8J2_30;
      F8J2_40; monodehydroascorbate reductase (NADH)-like protein; F8J2_50;
      protein kinase-like; F8J2_60; F8J2_70; F8J2_80; F8J2_90; fructose
      bisphosphate aldolase-like protein; F8J2_100; nuclear envelope membrane
      protein-like; F8J2_110; F8J2_120; peroxiredoxin-like protein; F8J2_130;
      cytochrome P450-like protein; F8J2_140; F8J2_150; pyruvate kinase-like
      protein; F8J2_160; F8J2_170; F8J2_180; 60S ribosomal protein-like;
      F8J2_190; serine protein kinase-like; F8J2_200; late embryogenesis
      abundant protein-like; F8J2_210; F8J2_220; kinetochore-like protein;
      F8J2_230; F8J2_240.

AF210731    AF210731     2130bp    mRNA     PLN      05-JUN-2000
     Arabidopsis thaliana scarecrow-like 1 (SCL1) mRNA, complete cds.
     SCL1; scarecrow-like 1.

AC027134    AC027134   102184bp    DNA      HTG      01-JUN-2000
     Arabidopsis thaliana chromosome I clone F13B4, *** SEQUENCING IN PROGRESS
      ***, 1 ordered pieces.
     HTG; HTGS_PHASE2.

AC034257    AC034257    98950bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete
      sequence.
     HTG.

AC068143    AC068143    36844bp    DNA      PLN      01-JUN-2000
     Arabidopsis thaliana chromosome 1 BAC T2D23 sequence, complete sequence.
     HTG.

AC068900    AC068900    96240bp    DNA      HTG      02-JUN-2000
     Arabidopsis thaliana chromosome III clone IGF-F11A12, *** SEQUENCING IN
      PROGRESS ***, 17 unordered pieces.
     HTG; HTGS_PHASE1.

AP002067    AP002067    84711bp    DNA      PLN      07-JUN-2000
     Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T7B9.
     HTG.

AC069325    AC069325    85237bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T10F18, *** SEQUENCING IN
      PROGRESS ***, 4 unordered pieces.
     HTG; HTGS_PHASE1.

AC069327    AC069327    93846bp    DNA      HTG      03-JUN-2000
     Arabidopsis thaliana chromosome 5 clone T26G08, *** SEQUENCING IN
      PROGRESS ***, 2 unordered pieces.
     HTG; HTGS_PHASE1.

AF263518    AF263518    10989bp    DNA      PLN      02-JUN-2000
     Arabidopsis thaliana protein synthesis initiation factor 4G (EIF4G) gene,
      complete cds.
     protein synthesis initiation factor 4G; EIF4G.


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