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New Arabidopsis DNA 30-May-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun May 31 21:23:26 EST 1998


====================== New DNA Sequences =======================

AB008518    AB008518      980bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana RMA1 mRNA, complete cds.
    RMA1.

AB014759    AB014759     1849bp    mRNA     PLN      30-MAY-1998
    Arabidopsis thaliana mRNA for Atcap1, complete cds.
    Atcap1; AtCAP1.

AC004747    AC004747    94004bp    DNA      HTG      24-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19L18'
     genomic sequence near marker 'B68'; HTGS phase 1, 2 unordered pieces.
    HTG; HTGS_PHASE1.

AF001949    AF001949      965bp    mRNA     PLN      27-MAY-1998
    Arabidopsis thaliana homeobox-leucine zipper protein ATHB-12 (Athb-12)
     mRNA, complete cds.
    Athb-12; ATHB-12.

AF035382    AF035382      361bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana catalase 3 (SEN2) mRNA, partial cds.
    SEN2; catalase 3.

AF035383    AF035383      412bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana polyubiquitin (SEN3) mRNA, partial cds.
    SEN3; polyubiquitin.

AF035384    AF035384      395bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana endo-xyloglucan transferase (SEN4) mRNA, partial
     cds.
    SEN4; endo-xyloglucan transferase.

AF035385    AF035385      406bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana SEN5 mRNA, partial cds.
    SEN5.

AF036340    AF036340     2291bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana LRR-containing F-box protein (COI1) mRNA, complete
     cds.
    COI1; LRR-containing F-box protein.

ATH005584   AJ005584     1350bp    mRNA     PLN      22-MAY-1998
    Arabidopsis thaliana mRNA for polygalacturonase.
    polygalacturonase, PGA3 gene; PGA3; polygalacturonase.

ATH6409     AJ006409      468bp    mRNA     PLN      27-MAY-1998
    Arabidopsis thaliana mRNA for flavanol sulfotransferase-like protein.
    flanavol sulfotransferase; flavonol sulfotransferase-like protein.

ATKCO1      Y07825     2851bp    DNA      PLN      23-MAY-1998
    A.thaliana kco1 gene.
    kco1 gene; kcol; kco1.

ATU80920    U80920     1129bp    mRNA     PLN      27-MAY-1998
    Arabidopsis thaliana serine/threonine protein phosphatase type one
     (TOPP7) mRNA, complete cds.
    TOPP7; serine/threonine protein phosphatase type one.

ATU80921    U80921     1149bp    DNA      PLN      27-MAY-1998
    Arabidopsis thaliana serine/threonine protein phosphatase type one
     (TOPP7) gene, complete cds.
    TOPP7; serine/threonine protein phosphatase type one.

ATU80922    U80922     1548bp    DNA      PLN      27-MAY-1998
    Arabidopsis thaliana serine/threonine protein phosphatase type one
     (TOPP8) gene, complete cds.
    TOPP8; serine/threonine protein phosphatase type one.

ATU88711    U88711      585bp    mRNA     PLN      30-MAY-1998
    Arabidopsis thaliana copper homeostasis factor (CCH) mRNA, complete cds.
    CCH; copper homeostasis factor.

D78598      D78598     1663bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    cytochrome P450 monooxygenase; CYP83B1.

D78599      D78599     1650bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP83A1; cytochrome P450 monooxygenase.

D78600      D78600     1893bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP76C1; cytochrome P450 monooxygenase.

D78601      D78601     1633bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP71B5; cytochrome P450 monooxygenase.

D78602      D78602     1549bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP71B3; cytochrome P450 monooxygenase.

D78603      D78603     1694bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP71B4; cytochrome P450 monooxygenase.

D78604      D78604     1655bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome p450 monooxygenase, complete
     cds.
    CYP71B6; cytochrome p450 monooxygenase.

D78605      D78605     1620bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP71B2; cytochrome P450 monooxygenase.

D78606      D78606     1580bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, partial cds.
    CYP91A1; cytochrome P450 monooxygenase.

D78607      D78607     1652bp    mRNA     PLN      28-MAY-1998
    Arabidopsis thaliana mRNA for cytochrome P450 monooxygenase, complete
     cds.
    CYP91A2; cytochrome P450 monooxygenase.

==================== Updated DNA Sequences =====================

AC004005    AC004005   109741bp    DNA      HTG      28-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F6E13'
     genomic sequence near marker 'CIC10F02, CIC02E07'; HTGS phase 2, 1
     ordered pieces.
    HTG; HTGS_PHASE2.

AC004136    AC004136    98957bp    DNA      HTG      28-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004261    AC004261    91570bp    DNA      HTG      28-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T3K9'
     genomic sequence near marker 'CIC11C08'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004411    AC004411   108698bp    DNA      HTG      28-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14M4'
     genomic sequence near marker 'CIC06C03'; HTGS phase 1, 2 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004561    AC004561   129214bp    DNA      HTG      28-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F16P2'
     genomic sequence near marker 'mi54'; HTGS phase 1, 13 unordered pieces.
    HTG; HTGS_PHASE1.

AC004669    AC004669    89779bp    DNA      HTG      28-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F7F1'
     genomic sequence near marker 'm283'; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004683    AC004683    93454bp    DNA      HTG      29-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T19C21'
     genomic sequence near marker 've018'; HTGS phase 1, 7 unordered pieces.
    HTG; HTGS_PHASE1.

AF021937    AF021937     7707bp    DNA      PLN      29-MAY-1998
    Arabidopsis thaliana catalase 3 (CAT3) and catalase 1 (CAT1) genes,
     complete cds.
    CAT3; catalase 3; CAT1; catalase 1.

ATAC002338  AC002338    79272bp    DNA      PLN      22-MAY-1998
    Arabidopsis thaliana chromosome II BAC T9D9 genomic sequence, complete
     sequence.
    HTG; T9D9.1; putative malonyl-CoA:Acyl carrier protein transacylase, 3'
     partial; T9D9.2; laccase isolog; T9D9.3; APG protein isolog; T9D9.4;
     T9D9.5; Na/H antiporter isolog; T9D9.6; DNA binding protein isolog;
     T9D9.7; spliceosomal protein U2B isolog; T9D9.8; T9D9.9; T9D9.10; EGF
     receptor like protein isolog; T9D9.11; T9D9.12; T9D9.13; pseudouridine
     synthase isolog; T9D9.14; RT14 protein isolog; T9D9.15; T9D9.16;
     T9D9.17; protein kinase isolog; T9D9.18; T9D9.19; T9D9.20;
     ferrochelatase precusor isolog; T9D9.21; T9D9.22; TCP1-chaperonin
     cofactor A isolog; T9D9.23; myb-like protein isolog.

ATAC004165  AC004165    83796bp    DNA      PLN      22-MAY-1998
    Arabidopsis thaliana chromosome II BAC T27E13 genomic sequence, complete
     sequence.
    HTG; T27E13.1; putative DNA-binding protein; T27E13.2; putative Na/H
     antiporter; T27E13.3; T27E13.4; putative APG-like protein; T27E13.5;
     putative laccase; T27E13.6; putative malonyl-CoA:Acyl carrier protein
     transacylase; T27E13.7; tRNA-Gly; T27E13.8; T27E13.9; T27E13.10;
     putative mitochondrial carrier protein; T27E13.11; putative
     indole-3-acetate beta-glucosyltransferase; T27E13.12; T27E13.13;
     T27E13.14; T27E13.15; ubiquitin activating enzyme (UBA1); T27E13.16;
     T27E13.17; hookless1-like protein; T27E13.18; putative Fe(II) transport
     protein; T27E13.19; high-affinity potassium transporter (AtKUP1);
     T27E13.20; AtRanBP1b protein; T27E13.21; sec13-related protein;
     T27E13.22; putative protein kinase, 5' partial.

ATAC004482  AC004482    92049bp    DNA      PLN      23-MAY-1998
    Arabidopsis thaliana chromosome II BAC F27L4 genomic sequence, complete
     sequence.
    HTG; F27L4.1; F27L4.2; pregeranylgeranyl pyrophosphate synthase; F27L4.3;
     F27L4.4; putative ring zinc finger protein; F27L4.5; putative receptor
     kinase; F27L4.6; putative BEL1-like homeotic protein; F27L4.7; putative
     Su(var)3-9 protein; F27L4.8; putative C2H2 zinc finger protein; F27L4.9;
     F27L4.10; F27L4.11; F27L4.12; F27L4.13; F27L4.20; cold acclimation
     protein WCOR413-like; F27L4.14; F27L4.15; F27L4.16; tRNA-Met; F27L4.17;
     F27L4.18; putative pectinesterase; F27L4.19; putative
     (s)-acetone-cyanohydrin lyase ((s)-hydroxynitrilase), 3'partial.

=========== Updated Sequence Features/Annotations  =============

AF012810    AF012810     2112bp    DNA      PLN      27-MAY-1998
    Arabidopsis thaliana chalcone synthase (CHS) gene, promoter and partial
     cds.
    CHS; chalcone synthase.

AF028809    AF028809     1009bp    mRNA     PLN      27-MAY-1998
    Arabidopsis thaliana eukaryotic cap-binding protein (eIF4E) mRNA,
     complete cds.
    eIF4E; eukaryotic cap-binding protein.

ATATB2      X99747     2809bp    DNA      PLN      27-MAY-1998
    A.thaliana ATB2 gene.
    bZIP; ATB2 gene; basic domain/leucine zipper transcription factor; ATB2;
     bZIP transcription factor.

ATPSIISBT   X98078      521bp    mRNA     PLN      26-MAY-1998
    A.thaliana mRNA for subunit T of photosystem II.
    photosynthesis; photosystem II; psbT gene; subunit T; PsbT.

YUP8H12R    AC002986   181925bp    DNA      PLN      23-MAY-1998
    Arabidopsis thaliana chromosome 1 YAC YUP8H12R sequence, complete
     sequence.
    HTG; YUP8H12R.1; YUP8H12R.2; YUP8H12R.3; YUP8H12R.4; YUP8H12R.5;
     YUP8H12R.6; YUP8H12R.7; tRNA-Lys; YUP8H12R.8; YUP8H12R.9; YUP8H12R.10;
     YUP8H12R.11; YUP8H12R.12; YUP8H12R.13; YUP8H12R.14; YUP8H12R.15;
     YUP8H12R.16; tRNA-Arg; YUP8H12R.17; YUP8H12R.18; YUP8H12R.19;
     YUP8H12R.20; YUP8H12R.21; YUP8H12R.22; YUP8H12R.23; YUP8H12R.24;
     YUP8H12R.25; YUP8H12R.26; YUP8H12R.27; YUP8H12R.28; YUP8H12R.29;
     YUP8H12R.30; YUP8H12R.31; YUP8H12R.32; YUP8H12R.33; YUP8H12R.34;
     YUP8H12R.35; YUP8H12R.36; YUP8H12R.37; YUP8H12R.38; YUP8H12R.39;
     YUP8H12R.40; YUP8H12R.42; YUP8H12R.43; YUP8H12R.44; YUP8H12R.45;
     YUP8H12R.46.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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