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New Arabidopsis DNA 09-May-1998

AtDB Project arabidopsis-seq at genome.stanford.edu
Sun May 10 19:17:33 EST 1998


====================== New DNA Sequences =======================

AC004665    AC004665   114273bp    DNA      HTG      05-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F4I18'
     genomic sequence near marker 'CIC02E07'; HTGS phase 1, 11 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004667    AC004667    95937bp    DNA      HTG      06-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T4C15'
     genomic sequence near marker 've016'; HTGS phase 1, 9 unordered pieces.
    HTG; HTGS_PHASE1.

AC004669    AC004669    94195bp    DNA      HTG      07-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F7F1'
     genomic sequence near marker 'm283'; HTGS phase 1, 5 unordered pieces.
    HTG; HTGS_PHASE1.

AF028809    AF028809     1009bp    mRNA     PLN      05-MAY-1998
    Arabidopsis thaliana eukaryotic initiation factor 4E (eIF4E) mRNA,
     complete cds.
    eIF4E; eukaryotic initiation factor 4E.

AF044031    AF044031     1161bp    DNA      PLN      02-MAY-1998
    Arabidopsis thaliana glutathione S-conjugate pump (MRP1) gene, promoter
     sequence.
    MRP1.

AF044032    AF044032     3009bp    DNA      PLN      02-MAY-1998
    Arabidopsis thaliana glutathione S-conjugate pump (MRP2) gene, promoter
     sequence.
    MRP2.

AF047834    AF047834     1508bp    mRNA     PLN      02-MAY-1998
    Arabidopsis thaliana 4-hydroxyphenylpyruvate dioxygenase mRNA, complete
     cds.
    4-hydroxyphenylpyruvate dioxygenase.

AF053063    AF053063      412bp    mRNA     PLN      02-MAY-1998
    Arabidopsis thaliana senescence associated gene (SAG18) mRNA, partial
     cds.
    SAG18.

AF053064    AF053064      890bp    mRNA     PLN      02-MAY-1998
    Arabidopsis thaliana senescence associated gene (SAG20) mRNA, partial
     cds.
    SAG20.

AF053065    AF053065      412bp    mRNA     PLN      02-MAY-1998
    Arabidopsis thaliana late embryogenesis abundant protein homolog (SAG21)
     mRNA, partial cds.
    SAG21; late embryogenesis abundant protein homolog.

AF061517    AF061517     1091bp    mRNA     PLN      05-MAY-1998
    Arabidopsis thaliana putative copper/zinc superoxide dismutase copper
     chaperone (CCS1) mRNA, complete cds.
    CCS1; putative copper/zinc superoxide dismutase copper chaperone.

ATAJ5927    AJ005927     1778bp    mRNA     PLN      06-MAY-1998
    Arabidopsis thaliana Sqp1;2 mRNA for squalene epoxidase (homologue).
    squalene epoxidase; Sqp1;2; squalene epoxidase homologue.

ATAJ5929    AJ005929     1756bp    mRNA     PLN      06-MAY-1998
    Arabidopsis thaliana Sqp2 mRNA for squalene epoxidase (homologue).
    squalene epoxidase; Sqp2; squalene epoxidase homologue.

ATAJ5930    AJ005930     1710bp    mRNA     PLN      06-MAY-1998
    Arabidopsis thaliana Sqp1;1 mRNA for squalene epoxidase (homologue).
    squalene epoxidase; Sqp1;1; squalene epoxidase homologue.

ATPUMP      AJ223983     1225bp    mRNA     PLN      02-MAY-1998
    Arabidopsis thaliana mRNA for plant uncoupling mitochondrial protein
     (PUMP).
    mitochondrial uncoupling protein; pump; PUMP; plant uncoupling
     mitochondrial protein.

D89051      D89051     1678bp    mRNA     PLN      08-MAY-1998
    Arabidopsis thaliana mRNA for ERD6 protein, complete cds.
    ERD6 protein.

==================== Updated DNA Sequences =====================

AC003040    AC003040   129175bp    DNA      HTG      02-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F26B6'
     genomic sequence near marker 'CIC06C07'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004122    AC004122    67874bp    DNA      HTG      01-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome I BAC
     T27I1 genomic sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004136    AC004136   109683bp    DNA      HTG      04-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T8K22'
     genomic sequence near marker 'CIC11A04'; HTGS phase 1, 5 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004392    AC004392   118710bp    DNA      HTG      05-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana chromosome 1 BAC F8K4
     sequence; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004393    AC004393    55721bp    DNA      PLN      02-MAY-1998
    Arabidopsis thaliana chromosome 1 BAC T1F15 sequence, complete sequence.
    HTG.

AC004450    AC004450    93962bp    DNA      HTG      05-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'IGF' BAC 'F14B2'
     genomic sequence near marker 'CIC10F02'; HTGS phase 1, 3 unordered
     pieces.
    HTG; HTGS_PHASE1.

AC004473    AC004473   116177bp    DNA      PLN      02-MAY-1998
    Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
    HTG.

AC004483    AC004483    89037bp    DNA      HTG      01-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T12J2'
     genomic sequence near marker 'mi421'; HTGS phase 1, 6 unordered pieces.
    HTG; HTGS_PHASE1.

AC004557    AC004557    99978bp    DNA      HTG      01-MAY-1998
    *** SEQUENCING IN PROGRESS *** Genomic sequence for Arabidopsis thaliana
     BAC F17L21; HTGS phase 2, 1 ordered pieces.
    HTG; HTGS_PHASE2.

AC004625    AC004625    49113bp    DNA      HTG      06-MAY-1998
    *** SEQUENCING IN PROGRESS *** Arabidopsis thaliana 'TAMU' BAC 'T26J13'
     genomic sequence near marker 'CIC11C08'; HTGS phase 1, 4 unordered
     pieces.
    HTG; HTGS_PHASE1.

ATBFRUCT    X89454     1890bp    mRNA     PLN      05-MAY-1998
    Arabidopsis thaliana mRNA for Beta-fructosidase.
    beta-fructofuranosidase; beta-fructosidase; Beta-fruct.

=========== Updated Sequence Features/Annotations  =============

AF013627    AF013627     1393bp    mRNA     PLN      01-MAY-1998
    Arabidopsis thaliana reversibly glycosylated polypeptide-1 (AtRGP) mRNA,
     complete cds.
    AtRGP; reversibly glycosylated polypeptide-1.

AF013628    AF013628     1401bp    mRNA     PLN      01-MAY-1998
    Arabidopsis thaliana reversibly glycosylated polypeptide-2 (AtRGP) mRNA,
     complete cds.
    AtRGP; reversibly glycosylated polypeptide-2.

AF034255    AF034255     1372bp    mRNA     PLN      01-MAY-1998
    Arabidopsis thaliana reversibly glycosylated polypeptide-3 (RGP) mRNA,
     complete cds.
    RGP; reversibly glycosylated polypeptide-3.

ATEST124N   Y10083      415bp    DNA      PLN      06-MAY-1998
    Arabidopsis thaliana matching EST 124N10.
    hypothetical protein.

ATEST44B7   Y10084      841bp    DNA      PLN      06-MAY-1998
    Arabidopsis thaliana matching EST 44B7.
    hypothetical protein.

ATESTPAP5   Y10085      595bp    DNA      PLN      06-MAY-1998
    Arabidopsis thaliana gene encoding putative desication related protein
     LEA1.
    desication related protein LEA14; hypothetical protein; putative
     desication related protein LEA14.

ATESTYAY1   Y10086     2131bp    DNA      PLN      06-MAY-1998
    Arabidopsis thaliana gene encoding putative dehydrogenase.
    dehydrogenase; hypothetical protein; putative dehydrogenase.

ATM4E13     AL022023    80346bp    DNA      PLN      05-MAY-1998
    Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project).
    M4E13.10; M4E13.20; cyclophilin - like protein; M4E13.30; actin
     depolymerizing factor - like protein; M4E13.40; subtilisin proteinase -
     like; M4E13.50; MYB- like protein; M4E13.60; L-ascorbate peroxidase;
     M4E13.70; beta-galactosidase - like protein; M4E13.80; Rho1Ps homolog/
     Rac-like protein; M4E13.90; protein kinase - like; M4E13.100; putative
     protein; M4E13.110; WD-40 repeat protein (MSI3); M4E13.120; M4E13.130;
     M4E13.135; M4E13.140; catalase; M4E13.150; plasma membrane intrinsic
     protein (SIMIP); M4E13.160; M4E13.170; M4E13.180; M4E13.190;
     hypothetical protein.

ATOAO8112   Y11190      618bp    mRNA     PLN      06-MAY-1998
    A.thaliana mRNA matching EST OAO811-2.
    hypothetical protein.

ATY09822    Y09822      759bp    mRNA     PLN      06-MAY-1998
    A.thaliana mRNA matching EST 144D4.
    hypothetical protein.

ATY09823    Y09823     1081bp    mRNA     PLN      06-MAY-1998
    A.thaliana mRNA matching EST 34f9.
    hypothetical protein.


NOTE: This message does not list any new Arabidopsis EST or BAC end
sequences.  However, both of those sequences are added to the BLAST
and FASTA databases available for searching via the AtDB Web Site.

To obtain any Arabidopsis DNA sequence use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web servers for sequences:
  BLAST & FASTA:  http://genome-www.stanford.edu/Arabidopsis/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://www.nig.ac.jp/




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